首页> 外文期刊>Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases >Full-length genomic analysis of porcine G9P[23] and G9P[7] rotavirus strains isolated from pigs with diarrhea in South Korea
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Full-length genomic analysis of porcine G9P[23] and G9P[7] rotavirus strains isolated from pigs with diarrhea in South Korea

机译:从韩国腹泻猪分离出的猪G9P [23]和G9P [7]轮状病毒株的全长基因组分析

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摘要

Group A rotaviruses (RVAs) are agents causing severe gastroenteritis in infants and young animals. G9 RVA strains are believed to have originated from pigs. However, this genotype has emerged as the fifth major human RVA genotype worldwide. To better understand the relationship between human and porcine RVA strains, complete RVA genome data are needed. For human RVA strains, the number of complete genome data have grown exponentially. However, there is still a lack of complete genome data on porcine RVA strains. Recently, G9 RVA strains have been identified as the third most important genotype in diarrheic pigs in South Korea in combinations with P[7] and P[23]. This study is the first report on complete genome analyses of 1 G9P[7] and 3 G9P[23] porcine RVA strains, resulting in the following genotype constellation: G9–P[7]/P[23]–I5–R1–C1–M1–A8–N1–T1–E1–H1. By comparisons of these genotype constellations, it was revealed that the Korean G9P[7] and G9P[23] RVA strains possessed a typical porcine RVA backbone, similar to other known porcine RVA strains. However, detailed phylogenetic analyses revealed the presence of intra-genotype reassortments among porcine RVA strains in South Korea. Thus, our data provide genetic information of G9 RVA strains increasingly detected in both humans and pigs, and will help to establish the role of pigs as a source or reservoir for novel human RVA strains.
机译:A组轮状病毒(RVA)是引起婴幼儿严重肠胃炎的药物。 G9 RVA菌株被认为起源于猪。但是,该基因型已成为全球第五种主要的人类RVA基因型。为了更好地了解人和猪RVA株之间的关系,需要完整的RVA基因组数据。对于人类RVA株,完整基因组数据的数量呈指数增长。然而,仍然缺乏关于猪RVA菌株的完整基因组数据。最近,已将G9 RVA菌株与P [7]和P [23]组合为韩国腹泻猪中的第三重要基因型。这项研究是对1株G9P [7]和3株G9P [23]猪RVA菌株进行完整基因组分析的第一份报告,其产生以下基因型星座:G9–P [7] / P [23] –I5–R1–C1 –M1–A8–N1–T1–E1–H1。通过比较这些基因型星座,发现韩国的G9P [7]和G9P [23] RVA菌株具有典型的猪RVA主链,与其他已知的猪RVA菌株相似。但是,详细的系统发育分析表明,韩国猪RVA株之间存在基因型内重配。因此,我们的数据提供了在人和猪中越来越多地检测到的G9 RVA株的遗传信息,并将有助于确立猪作为新型人RVA株的来源或贮藏库的作用。

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