首页> 外文期刊>Journal of cellular biochemistry. >Combining proteomics and bioinformatics to explore novel tegumental antigens as vaccine candidates against Echinococcus granulosus Echinococcus granulosus infection
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Combining proteomics and bioinformatics to explore novel tegumental antigens as vaccine candidates against Echinococcus granulosus Echinococcus granulosus infection

机译:结合蛋白质组学和生物信息学,探索新的Tegumental抗原作为抗棘突颗粒术术术术的疫苗粒细胞感染

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Abstract Echinococcus granulosus is the parasite responsible for cystic echinococcosis (CE), an important worldwide‐distributed zoonosis. New effective vaccines against CE could potentially have great economic and health benefits. Here, we describe an innovative vaccine design scheme starting from an antigenic fraction enriched in tegumental antigens from the protoscolex stage (termed PSEx) already known to induce protection against CE. We first used mass spectrometry to characterize the protein composition of PSEx followed by Gene Ontology analysis to study the potential Biological Processes, Molecular Functions, and Cellular Localizations of the identified proteins. Following, antigenicity predictions and determination of conservancy degree against other organisms were determined. Thus, nine novel proteins were identified as potential vaccine candidates. Furthermore, linear B cell epitopes free of posttranslational modifications were predicted in the whole PSEx proteome through colocalization of in silico predicted epitopes within peptide fragments identified by matrix‐assisted laser desorption/ionization‐TOF/TOF. Resulting peptides were termed “clean linear B cell epitopes,” and through BLASTp scanning against all nonhelminth proteins, those with 100% identity against any other protein were discarded. Then, the secondary structure was predicted for peptides and their corresponding proteins. Peptides with highly similar secondary structure respect to their parental protein were selected, and those potentially toxic and/or allergenic were discarded. Finally, the selected clean linear B cell epitopes were mapped within their corresponding 3D‐modeled protein to analyze their possible antibody accessibilities, resulting in 14 putative peptide vaccine candidates. We propose nine novel proteins and 14 peptides to be further tested as vaccine candidates against CE.
机译:摘要echinococcus颗粒是寄生虫,其负责囊性超声皮肤病(CE),这是一个重要的全球分布的人群病变。对CE的新有效疫苗可能具有巨大的经济和健康效益。在这里,我们描述了一种从已经已知的ProtoScolex阶段(称为PSEx)富含Tegumental抗原的抗原馏分开始的创新疫苗设计方案,该抗原已经已知已知诱导对CE的保护。我们首先使用质谱法来表征PSEx的蛋白质组成,然后进行基因本体分析,研究所鉴定的蛋白质的潜在生物过程,分子功能和细胞局部。确定,确定抗原性预测和对其他生物的保护程度的确定。因此,将九种新型蛋白质鉴定为潜在的疫苗候选物。此外,通过在由基质辅助激光解吸/离子化-TOF中鉴定的肽片段中的硅预测表位的分致化,在全部PSEx蛋白质组中预测了没有发生后改变的线性B细胞表位。得到的肽被称为“清洁线性B细胞表位”,并通过BLASTP扫描禁止所有非粘土蛋白,弃去任何其他蛋白质的100%同一性。然后,预测肽及其相应的蛋白质的二级结构。选择具有高度相似的二级结构的肽,尊重其亲本蛋白质,并且丢弃潜在的毒性和/或过敏率。最后,将所选的清洁线性B细胞表位映射在其相应的3D模拟蛋白质内,以分析其可能的抗体可见能力,导致14个推定的肽疫苗候选物。我们提出了九种新型蛋白质和14个肽作为疫苗候选者进一步测试。

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