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A unified thermostat scheme for efficient configurational sampling for classical/quantum canonical ensembles via molecular dynamics

机译:一种统一的恒温器方案,用于通过分子动力学进行经典/量子规范集合的高效配置采样

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摘要

We show a unified second-order scheme for constructing simple, robust, and accurate algorithms for typical thermostats for configurational sampling for the canonical ensemble. When Langevin dynamics is used, the scheme leads to the BAOAB algorithm that has been recently investigated. We show that the scheme is also useful for other types of thermostats, such as the Andersen thermostat and Nose-Hoover chain, regardless of whether the thermostat is deterministic or stochastic. In addition to analytical analysis, two 1-dimensional models and three typical real molecular systems that range from the gas phase, clusters, to the condensed phase are used in numerical examples for demonstration. Accuracy may be increased by an order of magnitude for estimating coordinate-dependent properties in molecular dynamics (when the same time interval is used), irrespective of which type of thermostat is applied. The scheme is especially useful for path integral molecular dynamics because it consistently improves the efficiency for evaluating all thermodynamic properties for any type of thermostat. Published by AIP Publishing.
机译:我们展示了一个统一的二阶方案,用于构建简单,坚固,精确的算法,用于典型的恒温器,用于典型集合的配置采样。使用Langevin动态时,该方案会导致最近调查的Baoab算法。我们表明该方案对于其他类型的恒温器也是有用的,例如Andersen恒温器和鼻子胡佛链,无论恒温器是确定性还是随机的。除了分析分析之外,在数值例子中使用来自气相,簇的三维模型和三维型号和三维实际分子系统,用于凝结相的数字实施例。可以通过用于估计分子动力学中的坐标依赖性的量级(当使用相同的时间间隔时)来增加准确度,而不管应用了哪种类型的恒温器。该方案对于路径整体分子动力学特别有用,因为它一致地提高了评估任何类型的恒温器的所有热力学性质的效率。通过AIP发布发布。

著录项

  • 来源
    《The Journal of Chemical Physics》 |2017年第3期|共24页
  • 作者单位

    Peking Univ Coll Chem &

    Mol Engn Inst Theoret &

    Computat Chem Beijing Natl Lab Mol Sci Beijing 100871 Peoples R China;

    Peking Univ Coll Chem &

    Mol Engn Inst Theoret &

    Computat Chem Beijing Natl Lab Mol Sci Beijing 100871 Peoples R China;

    Peking Univ Coll Chem &

    Mol Engn Inst Theoret &

    Computat Chem Beijing Natl Lab Mol Sci Beijing 100871 Peoples R China;

    Peking Univ Coll Chem &

    Mol Engn Inst Theoret &

    Computat Chem Beijing Natl Lab Mol Sci Beijing 100871 Peoples R China;

    Peking Univ Coll Chem &

    Mol Engn Inst Theoret &

    Computat Chem Beijing Natl Lab Mol Sci Beijing 100871 Peoples R China;

    Peking Univ Coll Chem &

    Mol Engn Inst Theoret &

    Computat Chem Beijing Natl Lab Mol Sci Beijing 100871 Peoples R China;

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  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 物理化学(理论化学)、化学物理学;
  • 关键词

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