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首页> 外文期刊>The Journal of Chemical Physics >Generalization of the Gaussian electrostatic model:Extension to arbitrary angular momentum,distributed multipoles,and speedup with reciprocal space methods
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Generalization of the Gaussian electrostatic model:Extension to arbitrary angular momentum,distributed multipoles,and speedup with reciprocal space methods

机译:高斯静电模型的推广:扩展到任意角动量,分布多极,并通过倒数空间方法加速

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The simulation of biological systems by means of current empirical force fields presents shortcomings due to their lack of accuracy,especially in the description of the nonbonded terms.We have previously introduced a force field based on density fitting termed the Gaussian electrostatic model-0(GEM-0)J.-P.Piquemal et al.[J.Chem.Phys.124,104101] that improves the description of the nonbonded interactions.GEM-0 relies on density fitting methodology to reproduce each contribution of the constrained space orbital variation(CSOV)energy decomposition scheme,by expanding the electronic density of the molecule in s-type Gaussian functions centered at specific sites.In the present contribution we extend the Coulomb and exchange components of the force field to auxiliary basis sets of arbitrary angular momentum.Since the basis functions with higher angular momentum have directionality,a reference molecular frame(local frame)formalism is employed for the rotation of the fitted expansion coefficients.In all cases the intermolecular interaction energies are calculated by means of Hermite Gaussian functions using the McMurchie-Davidson [J.Comput.Phys.26,218(1978)] recursion to calculate all the required integrals.Furthermore,the use of Hermite Gaussian functions allows a point multipole decomposition determination at each expansion site.Additionally,the issue of computational speed is investigated by reciprocal space based formalisms which include the particle mesh Ewald(PME)and fast Fourier-Poisson(FFP)methods.Frozen-core(Coulomb and exchange-repulsion)intermolecular interaction results for ten stationary points on the water dimer potential-energy surface,as well as a one-dimensional surface scan for the canonical water dimer,formamide,stacked benzene,and benzene water dimers,are presented.All results show reasonable agreement with the corresponding CSOV calculated reference contributions,around 0.1 and 0.15 kcal/mol error for Coulomb and exchange,respectively.Timing results for single Coulomb energy-force calculations for(H_2O)_n,n = 64,128,256,512,and 1024,in periodic boundary conditions with PME and FFP at two different rms force tolerances are also presented.For the small and intermediate auxiliaries,PME shows faster times than FFP at both accuracies and the advantage of PME widens at higher accuracy,while for the largest auxiliary,the opposite occurs.
机译:利用当前的经验力场对生物系统进行模拟由于其缺乏准确性而存在缺陷,特别是在对非键合项的描述中。我们先前引入了一种基于密度拟合的力场,称为高斯静电模型-0(GEM) -0)J.-P.Piquemal等人[J.Chem.Phys.124,104101]改进了对非键相互作用的描述。GEM-0依靠密度拟合方法来再现受约束的空间轨道变化的每个贡献(CSOV)能量分解方案,通过以特定位置为中心扩展s型高斯函数中分子的电子密度。在当前的贡献中,我们扩展了库仑并将力场的分量交换为任意角动量的辅助基础集。由于具有较高角动量的基函数具有方向性,因此将参考分子框架(局部框架)形式主义用于拟合的膨胀系数的旋转在所有情况下,分子间相互作用能都是通过使用Hermite高斯函数,使用McMurchie-Davidson [J.Comput.Phys.26,218(1978)]递归来计算所有必需的积分。此外,使用Hermite高斯函数允许在每个扩展点进行点多极分解确定。此外,还通过基于互空间的形式主义来研究计算速度的问题,这些形式主义包括粒子网格Ewald(PME)和快速傅里叶-泊松(FFP)方法。给出了水二聚体势能表面上10个固定点的分子间相互作用结果,以及标准水二聚体,甲酰胺,堆积的苯和苯水二聚体的一维表面扫描结果。与CSOV计算的参考贡献值显示合理的一致性,库仑和交换的误差分别为0.1和0.15 kcal / mol。还给出了(H_2O)_n,n = 64,128,256,512,和1024的单库仑能量-力计算,在PME和FFP在两种不同有效值力公差下的周期性边界条件下进行了计算。对于中小型助剂,PME显示的时间比FFP快在两个精度上,PME的优势都以更高的精度扩大,而对于最大的辅助设备,情况恰恰相反。

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