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Specific Material Recognition by Small Peptides Mediated by the Interfacial Solvent Structure

机译:界面溶剂结构介导的小肽对特定物质的识别

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摘要

We present evidence that specific material recognition by small peptides is governed by local solvent density variations at solid/liquid interfaces, sensed by the side-chain residues with atomic-scale precision. In particular, we unveil the origin of the selectivity of the binding motif RKLPDA for Ti over Si using a combination of metadynamics and steered molecular dynamics simulations, obtaining adsorption free energies and adhesion forces in quantitative agreement with corresponding experiments. For an accurate description, we employ realistic models of the natively oxidized surfaces which go beyond the commonly used perfect crystal surfaces. These results have profound implications for nanotechnology and materials science applications, offering a previously missing structure-function relationship for the rational design of materials-selective peptide sequences.
机译:我们提供的证据表明,小分子肽对特定物质的识别受固/液界面处局部溶剂密度变化的支配,该变化由具有原子级精度的侧链残基感知。特别是,我们结合了元动力学和分子动力学模拟,揭示了结合基序RKLPDA对Ti相对于Si的选择性,并获得了吸附自由能和粘附力,并与相应实验定量地吻合。为了准确描述,我们采用了自然氧化表面的逼真的模型,该模型超出了常用的完美晶体表面的范围。这些结果对纳米技术和材料科学应用具有深远的影响,为材料选择性肽序列的合理设计提供了以前缺失的结构-功能关系。

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  • 来源
    《Journal of the American Chemical Society》 |2012年第4期|p.2407-2413|共7页
  • 作者单位

    Hybrid Materials Interfaces Group, Faculty of Production Engineering and Bremen Center for Computational Materials Science,University of Bremen, D-28359 Bremen, Germany;

    Hybrid Materials Interfaces Group, Faculty of Production Engineering and Bremen Center for Computational Materials Science,University of Bremen, D-28359 Bremen, Germany;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
  • 原文格式 PDF
  • 正文语种 eng
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