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The Competing Mechanisms of Phosphate Monoester Dianion Hydrolysis

机译:磷酸单酯双阴离子水解的竞争机理

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摘要

Despite the numerous experimental and theoretical studies on phosphate monoester hydrolysis, significant questions remain concerning the mechanistic details of these biologically critical reactions. In the present work we construct a linear free energy relationship for phosphate monoester hydrolysis to explore the effect of modulating leaving group pK_a on the competition between solvent- and substrate-assisted pathways for the hydrolysis of these compounds. Through detailed comparative electronic-structure studies of methyl phosphate and a series of substituted aryl phosphate monoesters, we demonstrate that the preferred mechanism is dependent on the nature of the leaving group. For good leaving groups, a strong preference is observed for a more dissociative solvent-assisted pathway. However, the energy difference between the two pathways gradually reduces as the leaving group pK_a increases and creates mechanistic ambiguity for reactions involving relatively poor alkoxy leaving groups. Our calculations show that the transition-state structures vary smoothly across the range of pK_as studied and that the pathways remain discrete mechanistic alternatives. Therefore, while not impossible, a biological catalyst would have to surmount a significantly higher activation barrier to facilitate a substrate-assisted pathway than for the solvent-assisted pathway when phosphate is bonded to good leaving groups. For poor leaving groups, this intrinsic preference disappears.
机译:尽管对磷酸单酯水解进行了大量的实验和理论研究,但是关于这些生物学关键反应的机理细节仍然存在重大问题。在本工作中,我们构建了磷酸单酯水解的线性自由能关系,以探索调节离去基团pK_a对这些化合物水解的溶剂和底物辅助途径之间竞争的影响。通过对磷酸甲酯和一系列取代的磷酸芳基单酯进行详细的比较电子结构研究,我们证明了优选的机理取决于离去基团的性质。对于良好的离去基团,观察到强烈倾向于更解离的溶剂辅助途径。但是,随着离去基团pK_a的增加,两种途径之间的能量差逐渐减小,并为涉及相对较弱的烷氧基离去基团的反应造成了机械歧义。我们的计算表明,过渡态结构在所研究的pK_范围内平稳变化,并且这些途径仍然是离散的机制选择。因此,尽管并非不可能,但是当磷酸盐键合到良好的离去基团上时,与溶剂辅助途径相比,生物催化剂将必须克服显着更高的活化障碍以促进底物辅助途径。对于贫穷的离开群体,这种内在的偏好就消失了。

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  • 来源
    《Journal of the American Chemical Society》 |2016年第33期|10664-10673|共10页
  • 作者单位

    Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, BMC Box 596, SE-751 24 Uppsala, Sweden,Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA, United Kingdom, and Physical and Theoretical Chemistry Laboratory, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom;

    Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, BMC Box 596, SE-751 24 Uppsala, Sweden;

    Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, BMC Box 596, SE-751 24 Uppsala, Sweden;

    Department of Chemistry, Sheffield University, Sheffield S3 7HF, United Kingdom;

    Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, BMC Box 596, SE-751 24 Uppsala, Sweden;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
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  • 正文语种 eng
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