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Efficiency of genomic prediction across two Eucalyptus nitens seed orchards with different selection histories

机译:选择历史不同的两个桉树种子园的基因组预测效率

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摘要

Genomic selection is expected to enhance the genetic improvement of forest tree species by providing more accurate estimates of breeding values through marker-based relationship matrices compared with pedigree-based methodologies. When adequately robust genomic prediction models are available, an additional increase in genetic gains can be made possible with the shortening of the breeding cycle through elimination of the progeny testing phase and early selection of parental candidates. The potential of genomic selection was investigated in an advanced Eucalyptus nitens breeding population focused on improvement for solid wood production. A high-density SNP chip (EUChip60K) was used to genotype 691 individuals in the breeding population, which represented two seed orchards with different selection histories. Phenotypic records for growth and form traits at age six, and for wood quality traits at age seven were available to build genomic prediction models using GBLUP, which were compared to the traditional pedigree-based alternative using BLUP. GBLUP demonstrated that breeding value accuracy would be improved and substantial increases in genetic gains towards solid wood production would be achieved. Cross-validation within and across two different seed orchards indicated that genomic predictions would likely benefit in terms of higher predictive accuracy from increasing the size of the training data sets through higher relatedness and better utilization of LD
机译:与基于谱系的方法相比,基因组选择有望通过基于标记的关系矩阵提供更准确的育种值估计,从而增强森林树种的遗传改良。如果有足够健壮的基因组预测模型可用,则可以通过消除后代测试阶段和尽早选择亲本候选物来缩短繁殖周期,从而进一步增加遗传增益。在先进的桉树育种种群中,研究了基因组选择的潜力,该种群主要致力于提高实木产量。使用高密度SNP芯片(EUChip60K)对育种种群中的691个个体进行基因分型,该个体代表两个具有不同选择历史的种子园。可利用GBLUP建立六岁时的生长和形态特征以及七岁时的木材品质特征的表型记录,以建立使用GBLUP的基因组预测模型,并将其与使用BLUP的传统基于谱系的替代方法进行比较。 GBLUP证明了育种价值的准确性将得到提高,实现实木生产的遗传增益将大大增加。在两个不同种子园内和之间的交叉验证表明,基因组预测将可能通过提高训练数据集的大小,通过更高的相关性和更好地利用LD来提高预测准确性,从而从中受益

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