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Computational studies of polymer electrolyte complexes by molecular dynamics and molecular vibrations by principal component analysis.

机译:通过分子动力学和分子振动通过主成分分析进行聚合物电解质复合物的计算研究。

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The first three chapters of this dissertation are concerned with the structural properties of solid polymer electrolyte systems. Model polymers of poly(ethylene oxide) (PEO) and poly(ethylenimine) (PEI) containing four repeat units were studied by using molecular dynamics simulations. The chain dimensions, dihedral angle distributions, triad conformations were analyzed for PEO, PEI, and PEO:salt systems. The special ability of PEI chains to form two kinds of intra-chain hydrogen bonding, the single and double hydrogen bonding, makes the conformations of PEI chains more compact than PEO chains. The structural properties of PEO:LiCF3SO3 (lithium triflate) and PEO:NaCF3SO3 (having an ether oxygen: salt ratio of 10:1) complexes including the effects of oxygen-salt coordination on the polymer conformations and the ionic aggregation were also analyzed. The results show that the PEO chains contribute fewer oxygens (1.6 to Li+ and 2.2 to Na+ at 300K) to the cations than the triflate ions (4.6 and 4.9) and high temperature weakens PEO chain-cation coordination further. The species and the populations of different ionic aggregates calculated from MD simulations agree well with experimental values. All the results will help the understanding of ionic conductivity mechanisms in polymers.; The second part (Chapter 4 and 5) focuses on computing vibrational frequencies and modes by using a new technique, principal component analysis (PCA) which is broadly used in signal processing, pattern recognition, and multivariate analysis. The advantages of PCA to incorporate anharmonicity in the calculated spectra over the conventional normal mode analysis and Fourier transform are presented in Chapter 4. PCA-derived frequencies of harmonic, anharmonic (with a quartic term in the potential energy), and Langevin oscillators and water molecules are more accurate than the frequencies calculated by normal mode analysis and Fourier transforms, in comparison with analytical or experimental results. New procedures in order to improve the PCA method including the determination of the vibrational energy, removal of the translations and rotations from the trajectories, and the treatment of flexible molecules based on fragments are proposed. More test cases of water, methane, water dimer, and ethane are provided to show that the frequencies are greatly improved by applying these new procedures in addition to the original PCA method. The last chapter is a demonstration of one of PCA's abilities to study molecular vibrational problems. (Abstract shortened by UMI.)
机译:本文的前三章涉及固体聚合物电解质体系的结构性能。使用分子动力学模拟研究了包含四个重复单元的聚环氧乙烷(PEO)和聚乙撑亚胺(PEI)的模型聚合物。分析了PEO,PEI和PEO:盐系统的链尺寸,二面角分布,三重结构。 PEI链形成两种链内氢键(单氢键和双氢键)的特殊能力使PEI链的结构比PEO链更紧密。 PEO:LiCF 3 SO 3 (三氟甲磺酸锂)和PEO:NaCF 3 SO 3 (还分析了具有10:1的醚氧:盐比例的复合物,包括氧盐配位对聚合物构象和离子聚集的影响。结果表明,与三氟甲磺酸根离子(4.6和4.9)相比,PEO链对阳离子贡献的氧更少(在300K时,对Li + 为1.6,对Na + 为2.2。高温会进一步削弱PEO链-阳离子配位。通过MD模拟计算得出的不同离子聚集体的种类和种群与实验值非常吻合。所有结果将有助于理解聚合物中的离子电导率机理。第二部分(第4章和第5章)着重于通过使用一种新技术-主成分分析(PCA)来计算振动频率和模式,该技术广泛用于信号处理,模式识别和多元分析。与传统的正常模式分析和傅立叶变换相比,PCA在计算的频谱中包含非谐波的优势在第4章中介绍。PCA产生的谐波,非谐波(势能为四次项),朗格文振荡器和水的频率与分析或实验结果相比,分子比通过正常模式分析和傅立叶变换计算的频率更准确。为了改进PCA方法,提出了新的程序,包括确定振动能量,消除轨迹的平移和旋转以及基于片段的柔性分子的处理。提供了更多的水,甲烷,水二聚体和乙烷的测试用例,以表明通过应用这些新程序以及原始PCA方法,可以大大提高频率。最后一章说明了PCA研究分子振动问题的能力之一。 (摘要由UMI缩短。)

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