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Simulation of neutrophil adhesion under flow and the transition from rolling to firm adhesion.

机译:模拟中性粒细胞在流动下的粘附以及从滚动到牢固粘附的转变。

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摘要

The transition from rolling to firm adhesion is a key element of neutrophil activation and essential to the inflammatory response. Although selectins and beta2-integrins, the molecular mediators of rolling and firm adhesion, respectively, are well-studied, the precise mechanism by which a neutrophil achieves arrest remains unclear. This dissertation uses applied mathematics and computer simulation to model the phenomena of activation and arrest. Informed by results from detailed simulation, we first develop a semi-analytic model of steady-state leukocyte rolling. This simpler model, when submitted to dimensional analysis, permits a full investigation of the parameterization of rolling behavior and the transition from rolling to firm adhesion. Next, we simulate neutrophil activation by modifying the Adhesive Dynamics algorithm. We employ two different methods, both of which link selectin engagement to integrin activity. First, we include a deterministic, global integrin activation module, based on a Hill function model of the MAPK cascade. Second, using a kinetic Monte Carlo method, we develop a fully-stochastic model of integrin activation which treats the activation of each molecule individually as a function of free energy states. For both deterministic and stochastic activation models, we evaluate a leading activation hypothesis, approximate the observed in vivo behavior of neutrophils, and investigate the roles of various model parameters.
机译:从滚动到牢固粘附的转变是嗜中性粒细胞活化的关键因素,对炎症反应至关重要。尽管分别研究了滚动蛋白和牢固粘附的分子介导物选择素和β2-整合素,但尚不清楚嗜中性粒细胞达到阻滞作用的确切机制。本文运用应用数学和计算机仿真方法对激活和停滞现象进行建模。根据详细模拟的结果,我们首先建立稳态白细胞滚动的半分析模型。这个更简单的模型在进行尺寸分析时,可以对轧制行为的参数化以及从轧制到牢固附着力的过渡进行全面研究。接下来,我们通过修改“黏附动力学”算法模拟嗜中性粒细胞的活化。我们采用两种不同的方法,这两种方法都将选择蛋白的参与与整联蛋白的活性联系起来。首先,我们包括一个基于MAPK级联的Hill函数模型的确定性全局整合素激活模块。其次,使用动力学蒙特卡洛方法,我们开发了整联蛋白活化的完全随机模型,该模型将每个分子的活化分别视为自由能态的函数。对于确定性和随机激活模型,我们评估领先的激活假设,近似观察中性粒细胞的体内行为,并研究各种模型参数的作用。

著录项

  • 作者

    Krasik, Ellen F.;

  • 作者单位

    University of Pennsylvania.;

  • 授予单位 University of Pennsylvania.;
  • 学科 Engineering Biomedical.
  • 学位 Ph.D.
  • 年度 2006
  • 页码 183 p.
  • 总页数 183
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 生物医学工程;
  • 关键词

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