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AN EFFICIENT BICLUSTERING ALGORITHM FOR FINDING GENES WITH SIMILAR PATTERNS IN TIME-SERIES EXPRESSION DATA

机译:一种高效的Biclustering算法,用于在时间序列表达数据中查找具有类似模式的基因

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Biclustering algorithms have emerged as an important tool for the discovery of local patterns in gene expression data. For the case where the expression data corresponds to time-series, efficient algorithms that work with a discretized version of theexpression matrix are known. However, these algorithms assume that the biclusters to be found are perfect, in the sense that each gene in the bicluster exhibits exactly the same expression pattern along the conditions that belong to it. In this work, wepropose an algorithm that identifies genes with similar, but not necessarily equal, expression patterns, over a subset of the conditions. The results demonstrate that this approach identities biclusters biologically more significant than those discovered by other algorithms in the literature.
机译:BICLUSTING算法已成为发现基因表达数据中局部模式的重要工具。对于表达数据对应于时间序列的情况,已知使用与离散版本的SheExpression矩阵的有效算法。然而,这些算法假设要发现的双板是完美的,因此双方风险器中的每个基因展示了属于其条件的完全相同的表达模式。在这项工作中,Wepropose识别具有相似但不一定等于的基因的算法在条件的子集上。结果表明,这种方法在文献中的其他算法中发现的那些具有生物学上更重要的平板。

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