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EXACT ALGORITHMS FOR PLANTED MOTIF CHALLENGE PROBLEMS

机译:种植主题挑战问题的确切算法

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The problem of identifying meaningful patterns (i.e., motifs) from biological data has been studied extensively due to its paramount importance. Three versions of this problem have been identified in the literature. One of these three problems is theplanted (l, d)-motif problem. Several instances of this problem have been posed as a challenge. Numerous algorithms have been proposed in the literature that address this challenge. Many of these algorithms fall under the category of approximation algorithms. In this paper we present algorithms for the planted (l, d)-motif problem that always find the correct answer(s). Our algorithms are very simple and are based on ideas that are fundamentally different from the ones employed in the literature. We believe that the techniques we introduce in this paper will find independent applications.
机译:由于其最重要的重要性,已经过度研究了从生物数据中识别来自生物数据的有意义模式(即主题)的问题。在文献中已经确定了这个问题的三个版本。这三个问题中的一个是植物(L,D)-Motif问题。这个问题的几个实例被构成为挑战。在解决这一挑战的文献中提出了许多算法。许多这些算法属于近似算法的类别。在本文中,我们将始终找到正确答案的植物(L,D)-Motif问题的算法。我们的算法非常简单,并且基于从文献中所采用的那些基本不同的想法。我们认为,我们在本文中介绍的技术将找到独立的应用程序。

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