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The Power of Duples (in Self-Assembly): It's Not So Hip to Be Square

机译:二元组的力量(在自组装中):摆正并不那么时髦

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In this paper we define the Dupled abstract Tile Assembly Model (DaTAM), which is a slight extension to the abstract Tile Assembly Model (aTAM) that allows for not only the standard square tiles, but also "duple" tiles which are rectangles pre-formed by the joining of two square tiles. We show that the addition of duples allows for powerful behaviors of self-assembling systems at temperature 1, meaning systems which exclude the requirement of cooperative binding by tiles (i.e., the requirement that a tile must be able to bind to at least 2 tiles in an existing assembly if it is to attach). Cooperative binding is conjectured to be required in the standard aTAM for Turing universal computation and the efficient self-assembly of shapes, but we show that in the DaTAM these behaviors can in fact be exhibited at temperature 1. We then show that the DaTAM doesn't provide asymptotic improvements over the aTAM in its ability to efficiently build thin rectangles. Finally, we present a series of results which prove that the temperature-2 aTAM and temperature-1 DaTAM have mutually exclusive powers. That is, each is able to self-assemble shapes that the other can't, and each has systems which cannot be simulated by the other. Beyond being of purely theoretical interest, these results have practical motivation as duples have already proven to be useful in laboratory implementations of DNA-based tiles.
机译:在本文中,我们定义了Dupled抽象图块装配模型(DaTAM),它是对抽象图块装配模型(aTAM)的略微扩展,它不仅允许使用标准正方形图块,而且还允许使用矩形之前的“双重”图块。由两个方形瓷砖的连接所形成。我们表明,添加二元组可以使自组装系统在温度为1时表现出强大的性能,这意味着系统不包含通过瓦片进行协作绑定的要求(即,瓦片必须能够与至少2个瓦片绑定的要求)。现有装配体(如果要附加)。推测在图灵通用计算和形状的有效自组装的标准aTAM中需要合作绑定,但是我们证明了在DaTAM中,这些行为实际上可以在温度1下表现出来。在有效构建薄矩形的能力方面,它比aTAM渐近改进。最后,我们给出了一系列结果,证明了温度为2的aTAM和温度为1的DaTAM具有互斥的能力。也就是说,每个人都可以自我组装对方无法做到的形状,并且每个人都有无法被对方模拟的系统。除了纯粹的理论兴趣外,这些结果还具有实际动机,因为二重体已被证明可用于基于DNA的瓷砖的实验室实现。

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