FUNCTIONAL DATA INTEGRATED GENETIC MARKER SYSTEM, SSR-FMM, AND IMPROVED GENETIC RESEARCH AND MARKER ASSISTED SELECTION WITH SSR-FMM

摘要

A functional data integrated genetic marker system, SSR-FMM(simple sequence repeat-functional data motif marker) is provided to perform both trait selection and function analysis efficiently by integrating and analyzing the data and genetic markers required for identification of traits and functions. An SSR-FMM comprises SSR, a protein domain sequence itself, homologous protein through comparison with a protein of which sequence function is known, or a consensus marker having FM(functional motif) containing a specific pattern for functional activity of protein, and integrates the biological data base by integrating in silico gene annotation data for SSR-FMM sequence, wherein the SSR and FM are present in the consensus sequence, which is produced by EST(Expressed Sequence Tag) clustering and contig assembly, and total mRNA(messenger RNA) sequence or a part of RNA transcript sequence.