STREAMING PROCESSING OF SHORT READ ALIGNMENT ALGORITHMS

摘要

A technique for executing alignment algorithms on a SIMT processing environment is disclosed. An alignment algorithm having multiple stages is executed within the SIMT environment such that a different thread group executes each stage of the algorithm. Each thread group performs a different set of alignment operations related to a different stage of alignment algorithm for a group of short reads. In such a manner, the thread groups operate in unison to perform all the operations related to each stage of the alignment algorithm on every short read in the group of short reads.