Figure 6: (A) Tree resulted the standard MP analysis of the 98-loci supermatrix of the Great Apes (Hominidae, Primates, Mammalia) constructed using the modified summary of Lehtonen et al. (2011) (see “Materials and Methods” for the details) and a posteriori rooted relatively Papio (length = 12,092, CI = 0.7877, RI = 0.5597); 34,022 characters are constant, and the number of the parsimony-informative characters is equal to 4,311. MP BS values are provided below branches. The only characters with non-ambiguous value of the outgroup (Papio) have been saved within concatenated alignment; (B) the average consensus tree of the score 0.00084 resulted the analysis of the Hennigian forest of the 5,507 trees derived from the binary representation of the 98-loci supermatrix of the Great Apes (Hominidae, Primates, Mammalia) (see “Materials and Methods” for the details); Papio is assumed to be the best all-plesiomorphic group. “Additional…” FORESTER’s output tree file (see “Materials and Methods” for the details) selected for future analyses; (C) the average consensus tree of the score 0.00090 resulted the analysis of the Hennigian forest of the 5,339 trees derived from the modified binary representation of the 98-loci supermatrix of the Great Apes (Hominidae, Primates, Mammalia) (see 6.I. and “Materials and Methods” for the details), but with all 168 trees, which contain the clade (Homo plus Pan) have been removed from the input forest. “Additional…” FORESTER’s output tree file (see “Materials and Methods”) selected for future analyses.