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BMC Systems Biology

【机译】：BmC系统生物学

ISSN：-
出版周期：unknown.
语言：English

起始发布年份：2007
出版者：London : BioMed Central
出版地：England

NLM刊名缩写：BMC Syst Biol

数据库引入：PubMed: v1, 2007-v13, 2019, PMC

MeSH词表主题词：Models, Biological; Systems Biology*

备注：Title from journal home page (viewed Apr. 25, 2007). Latest issue consulted: 1:19展开▼

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1.Regulation of cytoplasmic polyadenylation can generate a bistable switch

机译：细胞质聚腺苷酸化的调控可产生双稳态开关
- 作者：Naveed Aslam;Harel Z Shouval
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
2.Structural analysis of eyespots: dynamics of morphogenic signals that govern elemental positions in butterfly wings

机译：眼点的结构分析：控制蝴蝶翅膀中元素位置的形态发生信号的动力学
- 作者：Joji M Otaki
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Butterfly wing Colour-pattern determination Eyespot Parafocal element Induction model Morphogenic signal;
3.Network motif comparison rationalizes Sec1/Munc18-SNARE regulation mechanism in exocytosis

机译：网络基序比较合理化Sec1 / Munc18-SNARE胞吐作用的调节机制
- 作者：Tian Xia;Jiansong Tong;Shailendra S Rathore;Xun Gu;Julie A Dickerson
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
4.Predicting new molecular targets for rhein using network pharmacology

机译：使用网络药理学预测大黄酸的新分子靶标
- 作者：Aihua Zhang;Hui Sun;Bo Yang;Xijun Wang
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
5.Set membership experimental design for biological systems

机译：设置生物系统成员资格实验设计
- 作者：Skylar W Marvel;Cranos M Williams
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
6.Redox balance is key to explaining full vs. partial switching to low-yield metabolism

机译：氧化还原平衡是解释完全或部分转换为低产率代谢的关键
- 作者：Milan JA van Hoek;Roeland MH Merks
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Metabolic switching Genome-scale metabolic model Flux Balance Analysis with Molecular Crowding Overflow metabolism Redox balance Escherichia coli Lactococcus lactis Saccharomyces cerevisiae;
7.An optimally evolved connective ratio of neural networks that maximizes the occurrence of synchronized bursting behavior

机译：神经网络的最佳演化连接率可最大化同步爆发行为的发生
- 作者：Chao-Yi Dong;Kwang-Hyun Cho
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
8.Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials

机译：树干毕赤酵母和巴斯德毕赤酵母的基因组规模代谢重建及其潜力的计算机分析
- 作者：Luis Caspeta;Saeed Shoaie;Rasmus Agren;Intawat Nookaew;Jens Nielsen
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
9.Bell-shaped and ultrasensitive dose-response in phosphorylation-dephosphorylation cycles: the role of kinase-phosphatase complex formation

机译：钟形和超敏感剂量反应的磷酸化-去磷酸化周期：激酶-磷酸酶复合物形成的作用
- 作者：Barbara Szomolay;Vahid Shahrezaei
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Cellular signalling Zero-order ultrasensitivity Phosphoinositide regulation Endosomal trafficking;
10.Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease

机译：代谢网络分析预测FDA批准的针对被忽视的热带病致病因子的药物的疗效
- 作者：Arvind K Chavali;Anna S Blazier;Jose L Tlaxca;Paul A Jensen;Richard D Pearson;Jason A Papin
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
11.Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis

机译：蛋白质共丰网络的拓扑分析确定了对于HCV感染和发病机理重要的新型宿主靶标
- 作者：Jason E McDermott;Deborah L Diamond;Courtney Corley;Angela L Rasmussen;Michael G Katze;Katrina M Waters
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
12.Creating and analyzing pathway and protein interaction compendia for modelling signal transduction networks

机译：创建和分析信号传导网络建模的途径和蛋白质相互作用纲要
- 作者：Daniel C Kirouac;Julio Saez-Rodriguez;Jennifer Swantek;John M Burke;Douglas A Lauffenburger;Peter K Sorger
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
13.Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions

机译：用于发现代谢功能的iJO1366大肠杆菌代谢网络重建的缺口填充分析
- 作者：Jeffrey D Orth;BernhardØ Palsson
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Constraint-based modeling Metabolic network reconstruction Escherichia coli Gap-filling Gene annotation;
14.Spatiotemporal network motif reveals the biological traits of developmental gene regulatory networks in Drosophila melanogaster

机译：时空网络的主题揭示了果蝇发育基因调控网络的生物学特性。
- 作者：Man-Sun Kim;Jeong-Rae Kim;Dongsan Kim;Arthur D Lander;Kwang-Hyun Cho
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
15.Gene regulation is governed by a core network in hepatocellular carcinoma

机译：基因调控由肝细胞癌的核心网络控制
- 作者：Zuguang Gu;Chenyu Zhang;Jin Wang
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
16.Revisiting the variation of clustering coefficient of biological networks suggests new modular structure

机译：重新审视生物网络聚类系数的变化表明新的模块化结构
- 作者：Dapeng Hao;Cong Ren;Chuanxing Li
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
17.A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica

机译：脂质积累酵母解脂耶氏酵母的基因组规模代谢模型
- 作者：Nicolas Loira;Thierry Dulermo;Jean-Marc Nicaud;David James Sherman
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
18.Morphogengineering roots: comparing mechanisms of morphogen gradientformation

机译：形态工程学的根：形态发生子梯度的比较机制编队
- 作者：Verônica A Grieneisen;Ben Scheres;Paulien Hogeweg;Athanasius F M Marée
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
19.Organizational structure and the periphery of the gene regulatory network in B-cell lymphoma

机译：B细胞淋巴瘤的基因调控网络的组织结构和外围
- 作者：Ricardo de Matos Simoes;Shailesh Tripathi;Frank Emmert-Streib
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- B-cell lymphoma Gene expression data Gene regulatory network Statistical network inference;
20.The slow-scale linear noise approximation: an accurate reduced stochastic description of biochemical networks under timescale separation conditions

机译：慢尺度线性噪声近似：在时尺度分离条件下对生化网络的准确减少的随机描述
- 作者：Philipp Thomas;Arthur V Straube;Ramon Grima
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
21.Spice: discovery of phenotype-determining component interplays

机译：Spice：表型决定因素相互作用的发现
- 作者：Zhengzhang Chen;Kanchana Padmanabhan;Andrea M Rocha;Yekaterina Shpanskaya;James R Mihelcic;Kathleen Scott;Nagiza F Samatova
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
22.A network perspective on metabolic inconsistency

机译：代谢不一致的网络观点
- 作者：Nikolaus Sonnenschein;José Felipe Golib Dzib;Annick Lesne;Sebastian Eilebrecht;Sheerazed Boulkroun;Maria-Christina Zennaro;Arndt Benecke;Marc-Thorsten Hütt
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
23.Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico

机译：使用通量比约束的基因组规模建模可实现计算机模拟梭菌代谢的代谢工程
- 作者：Michael J McAnulty;Jiun Y Yen;Benjamin G Freedman;Ryan S Senger
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Genome-scale model clostridia flux ratio flux balance analysis metabolic engineering systems biology;
24.Rational design of 13C-labeling experiments for metabolic flux analysis in mammalian cells

机译：用于哺乳动物细胞代谢通量分析的13C标记实验的合理设计
- 作者：Scott B Crown;Woo Suk Ahn;Maciek R Antoniewicz
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Metabolic flux analysis Stable-isotope tracers Experiment design Pathway analysis Statistical analysis Confidence intervals Mammalian cells Free fluxes Mass spectrometry;
25.From networks of protein interactions to networks of functional dependencies

机译：从蛋白质相互作用网络到功能依赖网络
- 作者：Davide Luciani;Gianfranco Bazzoni
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Protein interaction networks Biological functions Markov representations Peroxisomes Cell budding Polarized growth Saccharomyces cerevisiae;
26.Modeling suggests that gene circuit architecture controls phenotypic variability in a bacterial persistence network

机译：建模表明基因电路架构可控制细菌持久性网络中的表型变异
- 作者：Rachel S Koh;Mary J Dunlop
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Persister Toxin-antitoxin Gene regulatory network Feedback;
27.Trade-offs between drug toxicity and benefit in the multi-antibiotic resistance system underlie optimal growth of E. coli

机译：药物毒性与多重抗生素耐药性系统中的益处之间的权衡是大肠杆菌最佳生长的基础
- 作者：Kevin B Wood;Philippe Cluzel
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
28.Genome-scale metabolic model of the fission yeast Schizosaccharomyces pombe and the reconciliation of in silico/in vivo mutant growth

机译：裂殖酵母粟酒裂殖酵母的基因组规模代谢模型和计算机/体内突变体生长的调节
- 作者：Seung Bum Sohn;Tae Yong Kim;Jay H Lee;Sang Yup Lee
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Schizosaccharomyces pombe Genome-scale metabolic model Single-gene mutant growth Essentiality;
29.A systems biology approach reveals common metastatic pathways in osteosarcoma

机译：系统生物学方法揭示骨肉瘤中常见的转移途径
- 作者：Ricardo J Flores;Yiting Li;Alexander Yu;Jianhe Shen;Pulivarthi H Rao;Serrine S Lau;Marina Vannucci;Ching C Lau;Tsz-Kwong Man
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
30.Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

机译：酵母5 –酿酒酵母代谢网络的扩展重建
- 作者：Benjamin D Heavner;Kieran Smallbone;Brandon Barker;Pedro Mendes;Larry P Walker
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Metabolic Reconstruction Yeast Flux balance analysis GEM GENRE Model;
31.Stochastic simulations of a synthetic bacteria-yeast ecosystem

机译：合成细菌-酵母生态系统的随机模拟
- 作者：Konstantinos Biliouris;David Babson;Claudia Schmidt-Dannert;Yiannis N Kaznessis
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Stochastic modeling Synthetic ecosystem Cell-cell communication Synthetic microbial consortia Bacteria-yeast ecosystem;
32.Optimized submerged batch fermentation strategy for systems scale studies of metabolic switching in Streptomyces coelicolor A3(2)

机译：优化的水下分批发酵策略用于系统规模研究链霉菌A3（2）的代谢转换
- 作者：Alexander Wentzel;Per Bruheim;Anders Øverby;Øyvind M Jakobsen;Håvard Sletta;Walid A M Omara;David A Hodgson;Trond E Ellingsen
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
33.Mapping the stabilome: a novel computational method for classifying metabolic protein stability

机译：映射稳定蛋白：分类代谢蛋白稳定性的新计算方法
- 作者：Ralph Patrick;Kim-Anh Lê Cao;Melissa Davis;Bostjan Kobe;Mikael Bodén
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Protein stability Degradation Machine learning Post-translational modifications Bayesian networks Support vector machines Prediction;
34.Combinatorial network of transcriptional regulation and microRNA regulation in human cancer

机译：人类癌症中转录调控和microRNA调控的组合网络
- 作者：Hui Yu;Kang Tu;Yi-Jie Wang;Jun-Zhe Mao;Lu Xie;Yuan-Yuan Li;Yi-Xue Li
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
35.Simultaneous learning of instantaneous and time-delayed genetic interactions using novel information theoretic scoring technique

机译：使用新颖的信息理论评分技术同时学习瞬时和时延的遗传相互作用
- 作者：Nizamul Morshed;Madhu Chetty;Nguyen Xuan Vinh
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
36.Cancer core modules identification through genomic and transcriptomic changes correlation detection at network level

机译：通过网络水平的基因组和转录组变化相关性检测识别癌症核心模块
- 作者：Wenting Li;Rui Wang;Linfu Bai;Zhangming Yan;Zhirong Sun
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Cancer core modules Genotype-phenotype correlation Network analysis;
37.Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases

机译：基因相互作用富集和网络分析以确定复杂疾病中失调的途径及其相互作用
- 作者：Yu Liu;Mehmet Koyutürk;Jill S Barnholtz-Sloan;Mark R Chance
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Gene-gene interaction Dysregulated pathways Enrichment analysis BAD pathway;
38.A simple theoretical framework for understanding heterogeneous differentiation of CD4+ T cells

机译：了解CD4 + T细胞异质分化的简单理论框架
- 作者：Tian Hong;Jianhua Xing;Liwu Li;John J Tyson
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
39.Identifying MicroRNA-mRNA regulatory network in colorectal cancer by a combination of expression profile and bioinformatics analysis

机译：结合表达谱和生物信息学分析鉴定大肠癌中的MicroRNA-mRNA调控网络
- 作者：Jihong Fu;Wentao Tang;Peng Du;Guanghui Wang;Wei Chen;Jingming Li;Yunxiang Zhu;Jun Gao;Long Cui
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- MicroRNAs Target mRNAs Colorectal cancer Microarray;
40.Frequency-based time-series gene expression recomposition using PRIISM

机译：使用PRIISM的基于频率的时序基因表达重组
- 作者：Bruce A Rosa;Yuhua Jiao;Sookyung Oh;Beronda L Montgomery;Wensheng Qin;Jin Chen
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
41.Computational analysis of calcium signaling and membrane electrophysiology in cerebellar Purkinje neurons associated with ataxia

机译：小脑浦肯野神经元与共济失调相关的钙信号传导和膜电生理的计算分析
- 作者：Sherry-Ann Brown;Leslie M Loew
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Model IP3R Homer CAG repeat instability KCa channels Ataxia Computational BK channel Spinocerebellar Virtual cell;
42.iAK692: A genome-scale metabolic model of Spirulina platensis C1

机译：iAK692：螺旋藻C1基因组规模的代谢模型
- 作者：Amornpan Klanchui;Chiraphan Khannapho;Atchara Phodee;Supapon Cheevadhanarak;Asawin Meechai
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Spirulina platensis C1 Cyanobacteria Metabolic network reconstruction Genome-scale metabolic model Flux balance analysis;
43.Multi-compartmental modeling of SORLA’s influence on amyloidogenic processing in Alzheimer’s disease

机译：SORLA对阿尔茨海默氏病淀粉样蛋白生成过程影响的多隔室建模
- 作者：Angelyn Lao;Vanessa Schmidt;Yvonne Schmitz;Thomas E Willnow;Olaf Wolkenhauer
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Amyloidogenic processing Compartmental modeling LR11 Secretases SORL1 VPS10P domain receptors;
44.A regulatory network modeled from wild-type gene expression data guides functional predictions in Caenorhabditis elegans development

机译：以野生型基因表达数据为模型的调控网络可指导秀丽隐杆线虫发育的功能预测
- 作者：Brandilyn Stigler;Helen M Chamberlin
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
45.A quantitative model of the initiation of DNA replication in Saccharomyces cerevisiae predicts the effects of system perturbations

机译：酿酒酵母DNA复制起始的定量模型预测系统扰动的影响
- 作者：Rohan D Gidvani;Peter Sudmant;Grace Li;Lance F DaSilva;Brendan J McConkey;Bernard P Duncker;Brian P Ingalls
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
46.Dynamic optimization of distributed biological systems using robust and efficient numerical techniques

机译：使用强大有效的数值技术动态优化分布式生物系统
- 作者：Carlos Vilas;Eva Balsa-Canto;Maria-Sonia G García;Julio R Banga;Antonio A Alonso
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Dynamic optimization Distributed biological systems Reduced order models Global optimization methods Hybrid optimization methods Pattern formation and control;
47.Rational drug repositioning guided by an integrated pharmacological network of protein disease and drug

机译：蛋白质疾病和药物的综合药理网络指导合理的药物重新定位
- 作者：Hee Sook Lee;Taejeong Bae;Ji-Hyun Lee;Dae Gyu Kim;Young Sun Oh;Yeongjun Jang;Ji-Tea Kim;Jong-Jun Lee;Alessio Innocenti;Claudiu T Supuran;Luonan Chen;Kyoohyoung Rho;Sunghoon Kim
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Tripartite network Drug repositioning Shared Neighborhood Scoring (SNS) algorithm;
48.Different designs of kinase-phosphatase interactions and phosphatase sequestration shapes the robustness and signal flow in the MAPK cascade

机译：激酶-磷酸酶相互作用和磷酸酶螯合的不同设计塑造了MAPK级联反应的鲁棒性和信号流
- 作者：Uddipan Sarma;Indira Ghosh
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
49.An investigation of spatial signal transduction in cellular networks

机译：蜂窝网络中空间信号转导的研究
- 作者：Aiman Alam-Nazki;J Krishnan
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Cellular signal processing Spatial signalling Signalling motifs Global regulation Diffusion Non-linear dynamics Networks;
50.Estimation of dynamic flux profiles from metabolic time series data

机译：从代谢时间序列数据估算动态通量分布
- 作者：I-Chun Chou;Eberhard O Voit
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Biochemical systems theory Dynamic flux estimation Metabolic pathways Parameter estimation Structure identification Time series data;
51.Biochemical fluctuations optimisation and the linear noise approximation

机译：生化波动优化和线性噪声近似
- 作者：Jürgen Pahle;Joseph D Challenger;Pedro Mendes;Alan J McKane
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Linear noise approximation Optimisation Mitogen-activated kinases signalling COPASI Intrinsic noise Stochastic biochemical models Systems biology;
52.Multi-way metamodelling facilitates insight into the complex input-output maps of nonlinear dynamic models

机译：多向元模型化有助于深入了解非线性动态模型的复杂输入输出图
- 作者：Kristin Tøndel;Ulf G Indahl;Arne B Gjuvsland;Stig W Omholt;Harald Martens
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Parameter-phenotype map Dynamic models Metamodelling N-way Partial Least Squares Regression Hierarchical analysis HC-PLSR Cluster-analysis Input-output relationships Circadian clock;
53.Sets2Networks: network inference from repeated observations of sets

机译：Sets2Networks：从对集合的重复观察中得出的网络推断
- 作者：Neil R Clark;Ruth Dannenfelser;Christopher M Tan;Michael E Komosinski;Avi Maayan
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
54.Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs

机译：多个独立分析仅显示转录因子是与microRNA相关的丰富功能类别
- 作者：Larry Croft;Damian Szklarczyk;Lars Juhl Jensen;Jan Gorodkin
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
55.HINT: High-quality protein interactomes and their applications in understanding human disease

机译：提示：高质量的蛋白质相互作用组及其在理解人类疾病中的应用
- 作者：Jishnu Das;Haiyuan Yu
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Interactomes Networks Protein-protein interactions Disease;
56.A reaction–diffusion mechanism influences cell lineage progression as a basis for formation regeneration and stability of intestinal crypts

机译：反应扩散机制影响细胞谱系的进展将其作为肠隐窝形成再生和稳定性的基础
- 作者：Lei Zhang;Arthur D Lander;Qing Nie
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
57.Bayesian model selection validates a biokinetic model for zirconium processing in humans

机译：贝叶斯模型选择验证了人体中锆加工的生物动力学模型
- 作者：Daniel Schmidl;Sabine Hug;Wei Bo Li;Matthias B Greiter;Fabian J Theis
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Bayesian inference Model selection MCMC sampling Compartmental model Internal dosimetry Systems biology;
58.Preeclampsia: a bioinformatics approach through protein-protein interaction networks analysis

机译：先兆子痫：通过蛋白质-蛋白质相互作用网络分析的生物信息学方法
- 作者：Eduardo Tejera;João Bernardes;Irene Rebelo
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
59.Probing the role of stochasticity in a model of the embryonic stem cell – heterogeneous gene expression and reprogramming efficiency

机译：探索随机性在胚胎干细胞模型中的作用-异源基因表达和重编程效率
- 作者：Vijay Chickarmane;Victor Olariu;Carsten Peterson
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Stem cells Heterogeneity Stochasticity Computational model Differentiation Reprogramming;
60.Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model

机译：利用图形高斯模型推断拟南芥叶片淀粉代谢的转录基因调控网络
- 作者：Papapit Ingkasuwan;Supatcharee Netrphan;Sukon Prasitwattanaseree;Morakot Tanticharoen;Sakarindr Bhumiratana;Asawin Meechai;Jeerayut Chaijaruwanich;Hideki Takahashi;Supapon Cheevadhanarak
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Arabidopsis thaliana Constans-like Indeterminate domain 5 Graphical Gaussian model Starch synthase 4 Transcriptional regulation;
61.Chemoattraction of macrophages by secretory molecules derived from cells expressing the signal peptide of eosinophil cationic protein

机译：表达嗜酸性粒细胞阳离子蛋白信号肽的细胞分泌分子对巨噬细胞的化学吸引
- 作者：Yu-Shu Liu;Pei-Wen Tsai;Yong Wang;Tan-chi Fan;Chia-Hung Hsieh;Margaret Dah-Tsyr Chang;Tun-Wen Pai;Chien-Fu Huang;Chung-Yu Lan;Hao-Teng Chang
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Eosinophil cationic protein (ECP) Signal peptide Inflammation Functional linkage network Cell migration;
62.Exploring the genetic control of glycolytic oscillations in Saccharomyces Cerevisiae

机译：探索酿酒酵母糖酵解振荡的遗传控制
- 作者：Thomas Williamson;Delali Adiamah;Jean-Marc Schwartz;Lubomira Stateva
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Glycolytic oscillations Saccharomyces cerevisiae deletion mutants cAMP-PKA signal transduction pathway;
63.Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise

机译：模拟单细胞信号转导与蛋白质表达噪声之间相互作用的双峰细胞群体反应的出现
- 作者：Marc R Birtwistle;Jens Rauch;Anatoly Kiyatkin;Edita Aksamitiene;Maciej Dobrzyński;Jan B Hoek;Walter Kolch;Babatunde A Ogunnaike;Boris N Kholodenko
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
64.Topological effects of data incompleteness of gene regulatory networks

机译：基因调控网络数据不完整的拓扑效应
- 作者：Joaquin Sanz;Emanuele Cozzo;Javier Borge-Holthoefer;Yamir Moreno
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Biological networks Transcriptional regulatory networks Motifs significance Community structure Network superfamilies;
65.Balancing speed and accuracy of polyclonal T cell activation: a role for extracellular feedback

机译：多克隆T细胞活化的平衡速度和准确性：细胞外反馈的作用
- 作者：Yonatan Savir;Nir Waysbort;Yaron E Antebi;Tsvi Tlusty;Nir Friedman
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Systems immunology Positive feedback Speed vs. accuracy IL-2 CD25;
66.CardioNet: A human metabolic network suited for the study of cardiomyocyte metabolism

机译：CardioNet：适合于心肌细胞代谢研究的人类代谢网络
- 作者：Anja Karlstädt;Daniela Fliegner;Georgios Kararigas;Hugo Sanchez Ruderisch;Vera Regitz-Zagrosek;Hermann-Georg Holzhütter
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Computational biology Flux balance Heart Cardiomyocyte Efficency Metabolism;
67.Predicting and characterizing selective multiple drug treatments for metabolic diseases and cancer

机译：预测和表征针对代谢性疾病和癌症的选择性多种药物治疗
- 作者：Giuseppe Facchetti;Mattia Zampieri;Claudio Altafini
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Metabolic network Drug synergism Flux balance analysis Metabolic diseases Cancer;
68.Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs

机译：集成网络分析揭示了2009年大流行性流感病毒诱发的猕猴肺炎症细胞周期的新作用
- 作者：Jason E Shoemaker;Satoshi Fukuyama;Amie J Eisfeld;Yukiko Muramoto;Shinji Watanabe;Tokiko Watanabe;Yukiko Matsuoka;Hiroaki Kitano;Yoshihiro Kawaoka
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Influenza Host response Microarray pH1N1 Systems biology;
69.An integer optimization algorithm for robust identification of non-linear gene regulatory networks

机译：用于稳健识别非线性基因调控网络的整数优化算法
- 作者：Nishanth Chemmangattuvalappil;Keith Task;Ipsita Banerjee
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Gene regulatory networks Non-linear dynamics S-system Robust network identification Bootstrapping Integer programming Optimization algorithm;
70.System size reduction in stochastic simulations of the facilitated diffusion mechanism

机译：随机扩散机制随机模拟中的系统尺寸减小
- 作者：Nicolae Radu Zabet
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Simulation speed Transcription factor copy number DNA locus Gene regulation Transcription factor diffusion Binding affinity Occupancy profile lacI;
71.Computational modeling of apoptotic signaling pathways induced by cisplatin

机译：顺铂诱导的凋亡信号通路的计算模型
- 作者：Ji-Young Hong;Geun-Hong Kim;Jun-Woo Kim;Soon-Sung Kwon;Eisuke F Sato;Kwang-Hyun Cho;Eun Bo Shim
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Apoptotic pathways Cisplatin Mathematical model;
72.Nuclear Factor kappa B is central to Marek’s Disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo

机译：核因子κB对马立克氏病疱疹病毒诱导的CD30表达淋巴细胞的体内肿瘤转化至关重要
- 作者：Shyamesh Kumar;Dusan Kunec;Joram J Buza;Hsin-I Chiang;Huaijun Zhou;Sugalesini Subramaniam;Ken Pendarvis;Hans H Cheng;Shane C Burgess
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Marek’s disease Lymphomas Meq NF-κB Genetic resistance CD30 Proteomics;
73.A reconfigurable NAND/NOR genetic logic gate

机译：可重构的NAND / NOR遗传逻辑门
- 作者：Angel Goñi-Moreno;Martyn Amos
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Synthetic biology;
- Boolean logic;
- Multifunctionality;
74.Protein stickiness rather than number of functional protein-protein interactions predicts expression noise and plasticity in yeast

机译：蛋白质黏性而不是功能性蛋白质-蛋白质相互作用的数量可预测酵母中的表达噪音和可塑性
- 作者：Leandra M Brettner;Joanna Masel
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Protein-protein interaction networks Stochastic gene expression Evolutionary constraint Correlomics Cooperativity Phenotypic plasticity;
75.A checkpoints capturing timing-robust Boolean model of the budding yeast cell cycle regulatory network

机译：检查点捕获发芽酵母细胞周期调控网络的时序鲁棒布尔模型
- 作者：Changki Hong;Minho Lee;Dongsup Kim;Dongsan Kim;Kwang-Hyun Cho;Insik Shin
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Timing robustness Yeast cell cycle regulatory network Model checking Asynchronous Boolean networks;
76.A whole-body mathematical model of cholesterol metabolism and its age-associated dysregulation

机译：胆固醇代谢及其年龄相关失调的全身数学模型
- 作者：Mark T Mc Auley;Darren J Wilkinson;Janette JL Jones;Thomas BL Kirkwood
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
77.Gene autoregulation via intronic microRNAs and its functions

机译：通过内含子microRNA进行基因自动调节及其功能
- 作者：Carla Bosia;Matteo Osella;Mariama El Baroudi;Davide Corà;Michele Caselle
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
78.Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease

机译：基因调控网络分析支持炎症作为病毒疾病的关键神经退行性过程
- 作者：Isaac Crespo;Kirsten Roomp;Wiktor Jurkowski;Hiroaki Kitano;Antonio del Sol
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Prion disease Inflammation Neurodegeneration Gene regulatory network Perturbation Stable states;
79.Identification of estrogen responsive genes using esophageal squamous cell carcinoma (ESCC) as a model

机译：以食管鳞状细胞癌（ESCC）为模型鉴定雌激素反应性基因
- 作者：Magbubah Essack;Cameron Ross MacPherson;Sebastian Schmeier;Vladimir B Bajic
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
80.Robust synchronization control scheme of a population of nonlinear stochastic synthetic genetic oscillators under intrinsic and extrinsic molecular noise via quorum sensing

机译：固有和外在分子噪声下的群体感应下的非线性随机合成遗传振荡器的鲁棒同步控制方案
- 作者：Bor-Sen Chen;Chih-Yuan Hsu
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
81.A model of estrogen-related gene expression reveals non-linear effects in transcriptional response to tamoxifen

机译：雌激素相关基因表达模型揭示了对他莫昔芬转录反应的非线性影响
- 作者：Galina Lebedeva;Azusa Yamaguchi;Simon P Langdon;Kenneth Macleod;David J Harrison
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Estrogen receptor Cancer Tamoxifen SERM Mathematical model Global sensitivity analysis;
82.A proof for loop-law constraints in stoichiometric metabolic networks

机译：化学计量代谢网络中环路定律约束的证明
- 作者：Elad Noor;Nathan E Lewis;Ron Milo
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Thermodynamics Gordan’s theorem Metabolism;
83.Regulation of leukotriene and 5oxoETE synthesis and the effect of 5-lipoxygenase inhibitors: a mathematical modeling approach

机译：白三烯和5oxoETE合成的调节和5-脂氧合酶抑制剂的作用：一种数学建模方法
- 作者：Tatiana A Karelina;Kirill V Zhudenkov;Oleg O Demin;Dmitry V Svetlichny;Balaji Agoram;David Fairman;Oleg V Demin
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
84.A multiscale approximation in a heat shock response model of E. coli

机译：大肠杆菌热休克反应模型的多尺度近似
- 作者：Hye-Won Kang
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Multiscale Markov chains Chemical reaction Reaction networks Heat shock;
85.Compound stress response in stomatal closure: a mathematical model of ABA and ethylene interaction in guard cells

机译：气孔闭合过程中的复合应力响应：保卫细胞中ABA和乙烯相互作用的数学模型
- 作者：Mariano Beguerisse-Dıaz;Mercedes C Hernández-Gómez;Alessandro M Lizzul;Mauricio Barahona;Radhika Desikan
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- ROS Guard cells Stomatal closure Ethylene ABA Combined stimuli Antioxidants Mathematical modelling ODE models;
86.Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli

机译：时间分辨的转录组学数据与基于通量的方法的整合揭示了大肠杆菌中应激诱导的代谢适应
- 作者：Nadine Töpfer;Szymon Jozefczuk;Zoran Nikoloski
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Flux-based methods Genome-scale metabolic network Network optimization Adaptation;
87.Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida

机译：恶臭假单胞菌磷酸转移酶系统两个分支通量分布的建模和分析
- 作者：Andreas Kremling;Katharina Pflüger-Grau;Max Chavarría;Jacek Puchalka;Vitor Martins dos Santos;Víctor de Lorenzo
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Phosphotransferase System (PTS) Flux Balance Analysis (FBA) Kinetic modelling Metabolic Control Analysis (MCA);
88.Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach

机译：一种新的基于代谢限制的方法分析了鼠疫耶尔森氏菌的基因组水平转录数据
- 作者：Ali Navid;Eivind Almaas
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Flux balance analysis Gene-expression Yersinia pestis Stress response Metabolism;
89.Similar temperature dependencies of glycolytic enzymes: an evolutionary adaptation to temperature dynamics?

机译：糖酵解酶的温度依赖性类似：对温度动态的进化适应？
- 作者：Ana Luisa B Cruz;Marit Hebly;Giang-Huong Duong;Sebastian A Wahl;Jack T Pronk;Joseph J Heijnen;Pascale Daran-Lapujade;Walter M van Gulik
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Glycolysis Kinetic modelling Metabolomics Saccharomyces cerevisiae Temperature dynamics;
90.Clarifying off-target effects for torcetrapib using network pharmacology and reverse docking approach

机译：使用网络药理学和反向对接方法阐明托西曲布的脱靶效应
- 作者：Shengjun Fan;Qiang Geng;Zhenyu Pan;Xin Li;Lu Tie;Yan Pan;Xuejun Li
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
91.Analysis of alternative signaling pathways of endoderm induction of human embryonic stem cells identifies context specific differences

机译：对人类胚胎干细胞内胚层诱导的替代信号通路的分析确定了背景特异性差异
- 作者：Shibin Mathew;Maria Jaramillo;Xinan Zhang;Li Ang Zhang;Alejandro Soto-Gutiérrez;Ipsita Banerjee
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Human embryonic stem cells Endoderm Hierarchical clustering Biclustering Bootstrap;
92.Metabolic Flux-Based Modularity using Shortest Retroactive distances

机译：使用最短追溯距离的基于代谢通量的模块化
- 作者：Gautham Vivek Sridharan;Michael Yi;Soha Hassoun;Kyongbum Lee
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Modularity Metabolic networks Metabolic flux Edge-weighting Adipocyte metabolism Retroactivity;
93.FAME the Flux Analysis and Modeling Environment

机译：FAME通量分析和建模环境
- 作者：Joost Boele;Brett G Olivier;Bas Teusink
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
94.Tav4SB: integrating tools for analysis of kinetic models of biological systems

机译：Tav4SB：用于分析生物系统动力学模型的集成工具
- 作者：Mikołaj Rybiński;Michał Lula;Paweł Banasik;Sławomir Lasota;Anna Gambin
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
95.FluxMap: A VANTED add-on for the visual exploration of flux distributions in biological networks

机译：FluxMap：VANTED附加组件用于视觉探索生物网络中的通量分布
- 作者：Hendrik Rohn;Anja Hartmann;Astrid Junker;Björn H Junker;Falk Schreiber
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
96.STEPS: efficient simulation of stochastic reaction–diffusion models in realistic morphologies

机译：步骤：以真实形态有效地模拟随机反应扩散模型
- 作者：Iain Hepburn;Weiliang Chen;Stefan Wils;Erik De Schutter
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
97.PathCase-SB: integrating data sources and providing tools for systems biology research

机译：PathCase-SB：集成数据源并为系统生物学研究提供工具
- 作者：Sarp A Coskun;Xinjian Qi;Ali Cakmak;En Cheng;A Ercument Cicek;Lei Yang;Rishiraj Jadeja;Ranjan K Dash;Nicola Lai;Gultekin Ozsoyoglu;Zehra Meral Ozsoyoglu
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
98.URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries

机译：URDME：用于复杂几何结构中反应传输过程随机模拟的模块化框架
- 作者：Brian Drawert;Stefan Engblom;Andreas Hellander
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
99.Condor-COPASI: high-throughput computing for biochemical networks

机译：Condor-COPASI：生化网络的高通量计算
- 作者：Edward Kent;Stefan Hoops;Pedro Mendes
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期
- Systems biology Computational modelling High-throughput computing Distributed computing Simulation;
100.MicrobesFlux: a web platform for drafting metabolic models from the KEGG database

机译：MicrobesFlux：一个从KEGG数据库起草代谢模型的网络平台
- 作者：Xueyang Feng;You Xu;Yixin Chen;Yinjie J Tang
- 期刊名称：《BMC Systems Biology》 | 2012年第-1期