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GigaScience

【机译】：Gigascience

ISSN：-
出版周期：
语言：English

起始发布年份：2012
出版者：London : BioMed Central
出版地：United States

数据库引入：PubMed: v1, 2012-, PMC

MeSH词表主题词：Information Storage and Retrieval; Medical Informatics*

备注：Articles added on an individual basis as accepted. Description based on: 2012:1;展开▼

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1.Clinical outcome of preimplantation genetic diagnosis and screening using next generation sequencing

机译：下一代测序的植入前遗传学诊断和筛查的临床结果
- 作者：Yueqiu Tan;Xuyang Yin;Shuoping Zhang;Hui Jiang;Ke Tan;Jian Li;Bo Xiong;Fei Gong;Chunlei Zhang;Xiaoyu Pan;Fang Chen;Shengpei Chen;Chun Gong;Changfu Lu;Keli Luo;Yifan Gu;Xiuqing Zhang;Wei Wang;Xun Xu;Gábor Vajta;Lars Bolund;Huanming Yang;Guangxiu Lu;Yutao Du;Ge Lin
- 期刊名称：《GigaScience》 | 2014年第-1期
- Preimplantation genetic diagnosis/screening Next generation sequencing Blastocyst Cryopreserved embryo transfer Clinical outcome;
2.The rise of large-scale imaging studies in psychiatry

机译：大规模影像学研究在精神病学中的兴起
- 作者：Jessica A Turner
- 期刊名称：《GigaScience》 | 2014年第-1期
- Neuroinformatics Data sharing Clinical imaging Data mining;
3.How machine learning is shaping cognitive neuroimaging

机译：机器学习如何塑造认知神经影像
- 作者：Gael Varoquaux;Bertrand Thirion
- 期刊名称：《GigaScience》 | 2014年第-1期
- Machine learning Neuroimaging Cognition fMRI Decoding Encoding;
4.Free breathing myocardial perfusion data sets for performance analysis of motion compensation algorithms

机译：自由呼吸心肌灌注数据集用于运动补偿算法的性能分析
- 作者：Gert Wollny;Peter Kellman
- 期刊名称：《GigaScience》 | 2014年第-1期
- Heart Image registration Motion compensation Perfusion Validation;
5.GWATCH: a web platform for automated gene association discovery analysis

机译：GWATCH：用于自动基因关联发现分析的网络平台
- 作者：Anton Svitin;Sergey Malov;Nikolay Cherkasov;Paul Geerts;Mikhail Rotkevich;Pavel Dobrynin;Andrey Shevchenko;Li Guan;Jennifer Troyer;Sher Hendrickson;Holli Hutcheson Dilks;Taras K Oleksyk;Sharyne Donfield;Edward Gomperts;Douglas A Jabs;Efe Sezgin;Mark Van Natta;P Richard Harrigan;Zabrina L Brumme;Stephen J O’Brien
- 期刊名称：《GigaScience》 | 2014年第-1期
- AIDS HIV Complex diseases Genome-wide association studies (GWAS) Whole genome sequencing (WGS);
6.Advances in genome editing technology and its promising application in evolutionary and ecological studies

机译：基因组编辑技术的进步及其在进化和生态学研究中的应用前景
- 作者：Lei Chen;Linyi Tang;Hui Xiang;Lijun Jin;Qiye Li;Yang Dong;Wen Wang;Guojie Zhang
- 期刊名称：《GigaScience》 | 2014年第-1期
- Genetic modification Genetic innovations Domestication Life-environment interaction;
7.A comprehensive resource of genomic epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum

机译：黑松露块茎黑色素菌的基因组表观基因组和转录组测序数据的综合资源
- 作者：Pao-Yang Chen;Barbara Montanini;Wen-Wei Liao;Marco Morselli;Artur Jaroszewicz;David Lopez;Simone Ottonello;Matteo Pellegrini
- 期刊名称：《GigaScience》 | 2014年第-1期
- DNA methylation Tuber melanosporum Ascomycete truffle Pezizomycetes Transposable elements Whole-genome bisulfite sequencing Methylome Copy number variation Transposon expression 5-azacytidine Genome plasticity;
8.Data access for the 1000 Plants (1KP) project

机译：1000个植物（1KP）项目的数据访问
- 作者：Naim Matasci;Ling-Hong Hung;Zhixiang Yan;Eric J Carpenter;Norman J Wickett;Siavash Mirarab;Nam Nguyen;Tandy Warnow;Saravanaraj Ayyampalayam;Michael Barker;J Gordon Burleigh;Matthew A Gitzendanner;Eric Wafula;Joshua P Der;Claude W dePamphilis;Béatrice Roure;Hervé Philippe;Brad R Ruhfel;Nicholas W Miles;Sean W Graham;Sarah Mathews;Barbara Surek;Michael Melkonian;Douglas E Soltis;Pamela S Soltis;Carl Rothfels;Lisa Pokorny;Jonathan A Shaw;Lisa DeGironimo;Dennis W Stevenson;Juan Carlos Villarreal;Tao Chen;Toni M Kutchan;Megan Rolf;Regina S Baucom;Michael K Deyholos;Ram Samudrala;Zhijian Tian;Xiaolei Wu;Xiao Sun;Yong Zhang;Jun Wang;Jim Leebens-Mack;Gane Ka-Shu Wong
- 期刊名称：《GigaScience》 | 2014年第-1期
- Viridiplantae Biodiversity Transcriptomes Phylogenomics Interactions Pathways;
9.A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer

机译：在MinION™便携式单分子纳米孔测序仪上生成的参考细菌基因组数据集
- 作者：Joshua Quick;Aaron R Quinlan;Nicholas J Loman
- 期刊名称：《GigaScience》 | 2014年第-1期
- Genomics Nanopore sequencing;
10.A dataset comprising 141 magnetic resonance imaging scans of 98 extant sea urchin species

机译：数据集包括对98种海胆物种的141次磁共振成像扫描
- 作者：Alexander Ziegler;Cornelius Faber;Susanne Mueller;Nina Nagelmann;Leif Schröder
- 期刊名称：《GigaScience》 | 2014年第-1期
- MRI Echinodermata Echinoidea Morphology Soft tissue Systematics Anatomy Repository Evolution Morphomics;
11.iReport: a generalised Galaxy solution for integrated experimental reporting

机译：iReport：用于集成实验报告的通用Galaxy解决方案
- 作者：Saskia Hiltemann;Youri Hoogstrate;Peter van der Spek;Guido Jenster;Andrew Stubbs
- 期刊名称：《GigaScience》 | 2014年第-1期
- Galaxy Generic reporting application Next generation sequencing Genetic variation Pathogenic gene selection;
12.miRNA Temporal Analyzer (mirnaTA): a bioinformatics tool for identifying differentially expressed microRNAs in temporal studies using normal quantile transformation

机译：miRNA时间分析仪（mirnaTA）：一种生物信息学工具可使用正常分位数转换在时间研究中鉴定差异表达的microRNA
- 作者：Regina Z Cer;J Enrique Herrera-Galeano;Joseph J Anderson;Kimberly A Bishop-Lilly;Vishwesh P Mokashi
- 期刊名称：《GigaScience》 | 2014年第-1期
- microRNA miRNA Temporal Analyzer mirnaTA Time series Differential expression DE Quantile normalization Linear model Normal quantile transformation;
13.Crowdfunding the Azolla fern genome project: a grassroots approach

机译：众筹Azolla蕨基因组项目：基层方法
- 作者：Fay-Wei Li;Kathleen M Pryer
- 期刊名称：《GigaScience》 | 2014年第-1期
- Azolla Cyanobacteria Fern Genome sequencing Nitrogen fixation Nostoc Op-ed Social media Symbiosis Crowdfunding;
14.Between Two Fern Genomes

机译：在两个蕨基因组之间
- 作者：Emily B Sessa;Jo Ann Banks;Michael S Barker;Joshua P Der;Aaron M Duffy;Sean W Graham;Mitsuyasu Hasebe;Jane Langdale;Fay-Wei Li;D Blaine Marchant;Kathleen M Pryer;Carl J Rothfels;Stanley J Roux;Mari L Salmi;Erin M Sigel;Douglas E Soltis;Pamela S Soltis;Dennis W Stevenson;Paul G Wolf
- 期刊名称：《GigaScience》 | 2014年第-1期
- Azolla Ceratopteris Comparative analyses Ferns Genomics Land plants Monilophytes;
15.De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences

机译：从NextGen mRNA序列的普通mar猴转录组的从头组装
- 作者：Mnirnal D Maudhoo;Dongren Ren;Julien S Gradnigo;Robert M Gibbs;Austin C Lubker;Etsuko N Moriyama;Jeffrey A French;Robert B Norgren Jr
- 期刊名称：《GigaScience》 | 2014年第-1期
- Callithrix jacchus Common marmoset Transcriptome mRNA-seq Assembly;
16.Annotated features of domestic cat – Felis catus genome

机译：家猫的注释特征-Sus scrofa序列
- 作者：Gaik Tamazian;Serguei Simonov;Pavel Dobrynin;Alexey Makunin;Anton Logachev;Aleksey Komissarov;Andrey Shevchenko;Vladimir Brukhin;Nikolay Cherkasov;Anton Svitin;Klaus-Peter Koepfli;Joan Pontius;Carlos A Driscoll;Kevin Blackistone;Cristina Barr;David Goldman;Agostinho Antunes;Javier Quilez;Belen Lorente-Galdos;Can Alkan;Tomas Marques-Bonet;Marylin Menotti-Raymond;Victor A David;Kristina Narfström;Stephen J O’Brien
- 期刊名称：《GigaScience》 | 2014年第-1期
- Felis catus Domestic cat Felis silvestris silvestris European wildcat Genome sequence Annotation Assembly;
17.Low coverage sequencing of two Asian elephant (Elephas maximus) genomes

机译：两个亚洲象（Elephas maximus）基因组的低覆盖率测序
- 作者：Akbar Dastjerdi;Christelle Robert;Mick Watson
- 期刊名称：《GigaScience》 | 2014年第-1期
- Elephant Genome Sequencing Variation;
18.High-coverage sequencing and annotated assemblies of the budgerigar genome

机译：虎皮鹦鹉基因组的高覆盖率测序和注释装配
- 作者：Ganeshkumar Ganapathy;Jason T Howard;James M Ward;Jianwen Li;Bo Li;Yingrui Li;Yingqi Xiong;Yong Zhang;Shiguo Zhou;David C Schwartz;Michael Schatz;Robert Aboukhalil;Olivier Fedrigo;Lisa Bukovnik;Ty Wang;Greg Wray;Isabelle Rasolonjatovo;Roger Winer;James R Knight;Sergey Koren;Wesley C Warren;Guojie Zhang;Adam M Phillippy;Erich D Jarvis
- 期刊名称：《GigaScience》 | 2014年第-1期
- Melopsittacus undulatus Budgerigar Parakeet Next-generation sequencing Hybrid assemblies Optical maps Vocal learning;
19.Applying compressed sensing to genome-wide association studies

机译：将压缩感测应用于全基因组关联研究
- 作者：Shashaank Vattikuti;James J Lee;Christopher C Chang;Stephen D H Hsu;Carson C Chow
- 期刊名称：《GigaScience》 | 2014年第-1期
- GWAS Genomic selection Compressed sensing Lasso Underdetermined system Sparsity Phase transition;
20.The 3000 rice genomes project: new opportunities and challenges for future rice research

机译：3000个水稻基因组计划：未来水稻研究的新机遇和挑战
- 作者：Jia-Yang Li;Jun Wang;Robert S Zeigler
- 期刊名称：《GigaScience》 | 2014年第-1期
- Oryza sativa Genetic resources Genome diversity Phenomics Sequencing;
21.The 3000 rice genomes project

机译：3000个水稻基因组计划
- 期刊名称：《GigaScience》 | 2014年第-1期
- Oryza sativa Genetic resources Genome diversity Sequence variants Next generation sequencing;
22.A dataset comprising four micro-computed tomography scans of freshly fixed and museum earthworm specimens

机译：一个数据集包括四个固定的和博物馆museum标本的微型计算机断层扫描
- 作者：Jennifer Lenihan;Sebastian Kvist;Rosa Fernández;Gonzalo Giribet;Alexander Ziegler
- 期刊名称：《GigaScience》 | 2014年第-1期
- MicroCT Morphology Anatomy Taxonomy Lumbricidae Aporrectodea μCT Repository Imaging;
23.Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication

机译：大西洋assembly蟹基因组的联合装配和遗传作图揭示了古代全基因组重复
- 作者：Carlos W Nossa;Paul Havlak;Jia-Xing Yue;Jie Lv;Kimberly Y Vincent;H Jane Brockmann;Nicholas H Putnam
- 期刊名称：《GigaScience》 | 2014年第-1期
- Genotyping-by-sequencing (GBS) Genetic linkage mapping Genome evolution Limulus polyphemus;
24.Think globally and solve locally: secondary memory-based network learning for automated multi-species function prediction

机译：放眼全球并在本地解决：基于二级内存的网络学习可自动进行多种功能预测
- 作者：Marco Mesiti;Matteo Re;Giorgio Valentini
- 期刊名称：《GigaScience》 | 2014年第-1期
- Biomolecular networks Big data analysis Network-based learning;
25.A data repository and analysis framework for spontaneous neural activity recordings in developing retina

机译：视网膜发育中自发神经活动记录的数据存储库和分析框架
- 作者：Stephen John Eglen;Michael Weeks;Mark Jessop;Jennifer Simonotto;Tom Jackson;Evelyne Sernagor
- 期刊名称：《GigaScience》 | 2014年第-1期
- Retinal waves Spontaneous activity Electrophysiology HDF5 Multielectrode arrays;
26.Understanding how and why the Gene Ontology and its annotations evolve: the GO within UniProt

机译：了解基因本体及其注释的演变方式和原因：UniProt中的GO
- 作者：Rachael P Huntley;Tony Sawford;Maria J Martin;Claire O’Donovan
- 期刊名称：《GigaScience》 | 2014年第-1期
- Gene Ontology Annotation Function prediction Misinterpretation;
27.The founding charter of the Genomic Observatories Network

机译：基因组观测站网创始章程
- 作者：Neil Davies;Dawn Field;Linda Amaral-Zettler;Melody S Clark;John Deck;Alexei Drummond;Daniel P Faith;Jonathan Geller;Jack Gilbert;Frank Oliver Glöckner;Penny R Hirsch;Jo-Ann Leong;Chris Meyer;Matthias Obst;Serge Planes;Chris Scholin;Alfried P Vogler;Ruth D Gates;Rob Toonen;Véronique Berteaux-Lecellier;Michèle Barbier;Katherine Barker;Stefan Bertilsson;Mesude Bicak;Matthew J Bietz;Jason Bobe;Levente Bodrossy;Angel Borja;Jonathan Coddington;Jed Fuhrman;Gunnar Gerdts;Rosemary Gillespie;Kelly Goodwin;Paul C Hanson;Jean-Marc Hero;David Hoekman;Janet Jansson;Christian Jeanthon;Rebecca Kao;Anna Klindworth;Rob Knight;Renzo Kottmann;Michelle S Koo;Georgios Kotoulas;Andrew J Lowe;Viggó Thór Marteinsson;Folker Meyer;Norman Morrison;David D Myrold;Evangelos Pafilis;Stephanie Parker;John Jacob Parnell;Paraskevi N Polymenakou;Sujeevan Ratnasingham;George K Roderick;Naiara Rodriguez-Ezpeleta;Karsten Schonrogge;Nathalie Simon;Nathalie J Valette-Silver;Yuri P Springer;Graham N Stone;Steve Stones-Havas;Susanna-Assunta Sansone;Kate M Thibault;Patricia Wecker;Antje Wichels;John C Wooley;Tetsukazu Yahara;Adriana Zingone
- 期刊名称：《GigaScience》 | 2014年第-1期
- Biodiversity Genomics Biocode Earth observations;
28.CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy

机译：CGtag：基于云的Galaxy中完整的基因组学工具包和注释
- 作者：Saskia Hiltemann;Hailiang Mei;Mattias de Hollander;Ivo Palli;Peter van der Spek;Guido Jenster;Andrew Stubbs
- 期刊名称：《GigaScience》 | 2014年第-1期
- Complete genomics Next generation sequencing Genetic variation Pathogenic gene selection;
29.Galaxy tools to study genome diversity

机译：用于研究基因组多样性的Galaxy工具
- 作者：Oscar C Bedoya-Reina;Aakrosh Ratan;Richard Burhans;Hie Lim Kim;Belinda Giardine;Cathy Riemer;Qunhua Li;Thomas L Olson;Thomas P Loughran Jr;Bridgett M vonHoldt;George H Perry;Stephan C Schuster;Webb Miller
- 期刊名称：《GigaScience》 | 2013年第-1期
- Genome analysis Species conservation Population structure Selective sweeps Admixture;
30.EMPeror: a tool for visualizing high-throughput microbial community data

机译：EMPeror：可视化高通量微生物群落数据的工具
- 作者：Yoshiki Vázquez-Baeza;Meg Pirrung;Antonio Gonzalez;Rob Knight
- 期刊名称：《GigaScience》 | 2013年第-1期
- Microbial ecology QIIME Data visualization;
31.Ten recommendations for creating usable bioinformatics command line software

机译：创建可用的生物信息学命令行软件的十项建议
- 作者：Torsten Seemann
- 期刊名称：《GigaScience》 | 2013年第-1期
- Bioinformatics software Software quality User interface Unix Tools;
32.Biodiversity research in the big data era: GigaScience and Pensoft work together to publish the most data-rich species description

机译：大数据时代的生物多样性研究：GigaScience和Pensoft共同发布数据最丰富的物种描述
- 作者：Scott C Edmunds;Chris I Hunter;Vincent Smith;Pavel Stoev;Lyubomir Penev
- 期刊名称：《GigaScience》 | 2013年第-1期
33.The role of reporting standards for metabolite annotation and identification in metabolomic studies

机译：代谢物注释和鉴定的报告标准在代谢组学研究中的作用
- 作者：Reza M Salek;Christoph Steinbeck;Mark R Viant;Royston Goodacre;Warwick B Dunn
- 期刊名称：《GigaScience》 | 2013年第-1期
34.Using image mapping towards biomedical and biological data sharing

机译：使用图像映射进行生物医学和生物数据共享
- 作者：Nurzi Juana Mohd Zaizi;Dayang Nurfatimah Awang Iskandar
- 期刊名称：《GigaScience》 | 2013年第-1期
- Data integration Spatial relations Biomedical data Biomedical image Image mapping;
35.Research prioritization through prediction of future impact on biomedical science: a position paper on inference-analytics

机译：通过预测对生物医学的未来影响来确定研究的优先次序：关于推理分析的立场文件
- 作者：Madhavi K Ganapathiraju;Naoki Orii
- 期刊名称：《GigaScience》 | 2013年第-1期
- Impact prediction Data analytics Inference analytics Protein-protein interaction prediction Big-data;
36.Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

机译：Assemblathon 2：评估三种脊椎动物物种的基因组组装从头方法
- 作者：Keith R Bradnam;Joseph N Fass;Anton Alexandrov;Paul Baranay;Michael Bechner;Inanç Birol;Sébastien Boisvert;Jarrod A Chapman;Guillaume Chapuis;Rayan Chikhi;Hamidreza Chitsaz;Wen-Chi Chou;Jacques Corbeil;Cristian Del Fabbro;T Roderick Docking;Richard Durbin;Dent Earl;Scott Emrich;Pavel Fedotov;Nuno A Fonseca;Ganeshkumar Ganapathy;Richard A Gibbs;Sante Gnerre;Élénie Godzaridis;Steve Goldstein;Matthias Haimel;Giles Hall;David Haussler;Joseph B Hiatt;Isaac Y Ho;Jason Howard;Martin Hunt;Shaun D Jackman;David B Jaffe;Erich D Jarvis;Huaiyang Jiang;Sergey Kazakov;Paul J Kersey;Jacob O Kitzman;James R Knight;Sergey Koren;Tak-Wah Lam;Dominique Lavenier;François Laviolette;Yingrui Li;Zhenyu Li;Binghang Liu;Yue Liu;Ruibang Luo;Iain MacCallum;Matthew D MacManes;Nicolas Maillet;Sergey Melnikov;Delphine Naquin;Zemin Ning;Thomas D Otto;Benedict Paten;Octávio S Paulo;Adam M Phillippy;Francisco Pina-Martins;Michael Place;Dariusz Przybylski;Xiang Qin;Carson Qu;Filipe J Ribeiro;Stephen Richards;Daniel S Rokhsar;J Graham Ruby;Simone Scalabrin;Michael C Schatz;David C Schwartz;Alexey Sergushichev;Ted Sharpe;Timothy I Shaw;Jay Shendure;Yujian Shi;Jared T Simpson;Henry Song;Fedor Tsarev;Francesco Vezzi;Riccardo Vicedomini;Bruno M Vieira;Jun Wang;Kim C Worley;Shuangye Yin;Siu-Ming Yiu;Jianying Yuan;Guojie Zhang;Hao Zhang;Shiguo Zhou;Ian F Korf
- 期刊名称：《GigaScience》 | 2013年第-1期
- Genome assembly N50 Scaffolds Assessment Heterozygosity COMPASS;
37.Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data

机译：从在瑞典实施国家级基础设施以存储和分析下一代测序数据中学到的经验教训
- 作者：Samuel Lampa;Martin Dahlö;Pall I Olason;Jonas Hagberg;Ola Spjuth
- 期刊名称：《GigaScience》 | 2013年第-1期
- Next-generation sequencing Infrastructure High-performance computing Bioinformatics Genomics Data analysis;
38.Dissemination of metabolomics results: role of MetaboLights and COSMOS

机译：代谢组学结果的传播：MetaboLights和COSMOS的作用
- 作者：Reza M Salek;Kenneth Haug;Christoph Steinbeck
- 期刊名称：《GigaScience》 | 2013年第-1期
- Metabolomics MetaboLights Database Repository Data sharing Standard MSI ISA-Tab Curation COSMOS;
39.Quantifying the use of bioresources for promoting their sharing in scientific research

机译：量化利用生物资源促进科研共享
- 作者：Laurence Mabile;Raymond Dalgleish;Gudmundur A Thorisson;Mylène Deschênes;Robert Hewitt;Jane Carpenter;Elena Bravo;Mirella Filocamo;Pierre Antoine Gourraud;Jennifer R Harris;Paul Hofman;Francine Kauffmann;Maria Angeles Muñoz-Fernàndez;Markus Pasterk;Anne Cambon-Thomsen
- 期刊名称：《GigaScience》 | 2013年第-1期
- Data sharing Bioresource Biobank Identifier Metrics Traceability Impact factor Biology Science policy Open data;
40.A test-retest fMRI dataset for motor language and spatial attention functions

机译：用于运动语言和空间注意功能的重测fMRI数据集
- 作者：Krzysztof J Gorgolewski;Amos Storkey;Mark E Bastin;Ian R Whittle;Joanna M Wardlaw;Cyril R Pernet
- 期刊名称：《GigaScience》 | 2013年第-1期
- Test-retest Overt verb generation Covert verb generation Overt word repetition Landmark Motor fMRI DTI;
41.Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification

机译：超深测序无需PCR扩增即可实现大量节肢动物样品的生物多样性高保真度恢复
- 作者：Xin Zhou;Yiyuan Li;Shanlin Liu;Qing Yang;Xu Su;Lili Zhou;Min Tang;Ribei Fu;Jiguang Li;Quanfei Huang
- 期刊名称：《GigaScience》 | 2013年第-1期
- Next-generation-sequencing Species richness Abundance Biomonitoring Insect biodiversity Mitochondria PCR-independent Metabarcoding;
42.AXIOME: automated exploration of microbial diversity

机译：AXIOME：自动探索微生物多样性
- 作者：Michael DJ Lynch;Andre P Masella;Michael W Hall;Andrea K Bartram;Josh D Neufeld
- 期刊名称：《GigaScience》 | 2013年第-1期
- Microbial ecology Automation SSU rRNA High-throughput sequencing QIIME mothur;
43.Crowdsourcing genomic analyses of ash and ash dieback – power to the people

机译：灰分众包基因组分析和灰分固结-给人民的力量
- 作者：Dan MacLean;Kentaro Yoshida;Anne Edwards;Lisa Crossman;Bernardo Clavijo;Matt Clark;David Swarbreck;Matthew Bashton;Patrick Chapman;Mark Gijzen;Mario Caccamo;Allan Downie;Sophien Kamoun;Diane GO Saunders
- 期刊名称：《GigaScience》 | 2013年第-1期
- Crowdsource Genomics Ash dieback Open source Altmetrics;
44.Peering into peer-review at GigaScience

机译：关注GigaScience的同行评审
- 作者：Scott C Edmunds
- 期刊名称：《GigaScience》 | 2013年第-1期
45.SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

机译：SOAPdenovo2：从经验上提高了内存效率的短读从头汇编程序
- 作者：Ruibang Luo;Binghang Liu;Yinlong Xie;Zhenyu Li;Weihua Huang;Jianying Yuan;Guangzhu He;Yanxiang Chen;Qi Pan;Yunjie Liu;Jingbo Tang;Gengxiong Wu;Hao Zhang;Yujian Shi;Yong Liu;Chang Yu;Bo Wang;Yao Lu;Changlei Han;David W Cheung;Siu-Ming Yiu;Shaoliang Peng;Zhu Xiaoqian;Guangming Liu;Xiangke Liao;Yingrui Li;Huanming Yang;Jian Wang;Tak-Wah Lam;Jun Wang
- 期刊名称：《GigaScience》 | 2012年第-1期
- Genome Assembly Contig Scaffold Error correction Gap-filling;
46.Correction: Genome empowerment for the Puerto Rican parrot – Amazona vittata

机译：更正：波多黎各鹦鹉的基因组赋权– Amazona vittata
- 作者：Stephen J O’Brien
- 期刊名称：《GigaScience》 | 2012年第-1期
47.The sequence and analysis of a Chinese pig genome

机译：中国猪基因组序列分析
- 作者：Xiaodong Fang;Yulian Mou;Zhiyong Huang;Yong Li;Lijuan Han;Yanfeng Zhang;Yue Feng;Yuanxin Chen;Xuanting Jiang;Wei Zhao;Xiaoqing Sun;Zhiqiang Xiong;Lan Yang;Huan Liu;Dingding Fan;Likai Mao;Lijie Ren;Chuxin Liu;Juan Wang;Kui Li;Guangbiao Wang;Shulin Yang;Liangxue Lai;Guojie Zhang;Yingrui Li;Jun Wang;Lars Bolund;Huanming Yang;Jian Wang;Shutang Feng;Songgang Li;Yutao Du
- 期刊名称：《GigaScience》 | 2012年第-1期
- Wuzhishan pig Genome Homozygosis Transposable element Endogenous retrovirus Animal model;
48.A genome blogger manifesto

机译：基因组博主宣言
- 作者：Manuel Corpas
- 期刊名称：《GigaScience》 | 2012年第-1期
- Genome Blogging Personal genomics;
49.A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education

机译：一项由当地资助的波多黎各鹦鹉（Amazona vittata）基因组测序项目可增加禽类数据并促进年轻研究人员的教育
- 作者：Taras K Oleksyk;Jean-Francois Pombert;Daniel Siu;Anyimilehidi Mazo-Vargas;Brian Ramos;Wilfried Guiblet;Yashira Afanador;Christina T Ruiz-Rodriguez;Michael L Nickerson;David M Logue;Michael Dean;Luis Figueroa;Ricardo Valentin;Juan-Carlos Martinez-Cruzado
- 期刊名称：《GigaScience》 | 2012年第-1期
- Amazona vittata Puerto rican parrot Genome sequence Annotation Assembly Local funding Education;
50.Genome empowerment for the Puerto Rican parrot – Amazona vittata

机译：波多黎各鹦鹉的基因组赋权– Amazona vittata
- 作者：Stephen J O’Brien
- 期刊名称：《GigaScience》 | 2012年第-1期
- Puerto Rican parrot Whole-genome sequencing Genomics Conservation Education Funding;
51.Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer

机译：单细胞测序分析可表征肌肉浸润性膀胱癌中常见的和细胞谱系特异性突变
- 作者：Yingrui Li;Xun Xu;Luting Song;Yong Hou;Zesong Li;Shirley Tsang;Fuqiang Li;Kate McGee Im;Kui Wu;Hanjie Wu;Xiaofei Ye;Guibo Li;Linlin Wang;Bo Zhang;Jie Liang;Wei Xie;Renhua Wu;Hui Jiang;Xiao Liu;Chang Yu;Hancheng Zheng;Min Jian;Liping Nie;Lei Wan;Min Shi;Xiaojuan Sun;Aifa Tang;Guangwu Guo;Yaoting Gui;Zhiming Cai;Jingxiang Li;Wen Wang;Zuhong Lu;Xiuqing Zhang;Lars Bolund;Karsten Kristiansen;Jian Wang;Huanming Yang;Michael Dean;Jun Wang
- 期刊名称：《GigaScience》 | 2012年第-1期
- Single-cell exome sequencing Bladder cancer Tumor evolution Population genetics;
52.The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

机译：生物观察矩阵（BIOM）格式或：我如何学会不再担心并热爱煎蛋
- 作者：Daniel McDonald;Jose C Clemente;Justin Kuczynski;Jai Ram Rideout;Jesse Stombaugh;Doug Wendel;Andreas Wilke;Susan Huse;John Hufnagle;Folker Meyer;Rob Knight;J Gregory Caporaso
- 期刊名称：《GigaScience》 | 2012年第-1期
- Microbial ecology Comparative genomics Metagenomics QIIME MG-RAST VAMPS BIOM;
53.Data sharing and publishing in the field of neuroimaging

机译：神经影像领域的数据共享和发布
- 作者：Janis L Breeze;Jean-Baptiste Poline;David N Kennedy
- 期刊名称：《GigaScience》 | 2012年第-1期
- Neuroimaging Neuroscience Data sharing Data publishing Standards;
54.On the evolving portfolio of community-standards and data sharing policies: turning challenges into new opportunities

机译：关于不断发展的社区标准和数据共享政策组合：将挑战变成新机遇
- 作者：Susanna-Assunta Sansone;Philippe Rocca-Serra
- 期刊名称：《GigaScience》 | 2012年第-1期
- Standard Ontology Data sharing Curation Data policy ISA commons ISA-Tab BioSharing;
55.Tissue sampling methods and standards for vertebrate genomics

机译：脊椎动物基因组学的组织采样方法和标准
- 作者：Pamela BY Wong;Edward O Wiley;Warren E Johnson;Oliver A Ryder;Stephen J O’Brien;David Haussler;Klaus-Peter Koepfli;Marlys L Houck;Polina Perelman;Gabriela Mastromonaco;Andrew C Bentley;Byrappa Venkatesh;Ya-ping Zhang;Robert W Murphy
- 期刊名称：《GigaScience》 | 2012年第-1期
- Genome 10K Sequencing Vertebrates Genomics Tissue sampling Tissue storage Cell line Tissue culture RNA DNA;
56.GigaDB: announcing the GigaScience database

机译：GigaDB：宣布GigaScience数据库
- 作者：Tam P Sneddon;Peter Li;Scott C Edmunds
- 期刊名称：《GigaScience》 | 2012年第-1期
57.Badomics words and the power and peril of the ome-meme

机译：Badomics单词和omeme的力量和危险
- 作者：Jonathan A Eisen
- 期刊名称：《GigaScience》 | 2012年第-1期
- Genomics Language Memes Omics Badomics Genome Ome-ome Language parasites;
58.A call for an international network of genomic observatories (GOs)

机译：呼吁建立国际基因组观测站（GO）网络
- 作者：Neil Davies;Chris Meyer;Jack A Gilbert;Linda Amaral-Zettler;John Deck;Mesude Bicak;Philippe Rocca-Serra;Susanna Assunta-Sansone;Kathy Willis;Dawn Field
- 期刊名称：《GigaScience》 | 2012年第-1期
- Ecogenomics Earth observation Biodiversity Ecosystems Biocode Genomic observatory DNA;
59.The rise of a digital immune system

机译：数字免疫系统的兴起
- 作者：Michael C Schatz;Adam M Phillippy
- 期刊名称：《GigaScience》 | 2012年第-1期
60.Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiers

机译：适用于潜在表观基因组修饰子的基因敲除研究的甲基化组分析资源
- 作者：Gareth A Wilson;Pawandeep Dhami;Andrew Feber;Daniel Cortázar;Yuka Suzuki;Reiner Schulz;Primo Schär;Stephan Beck
- 期刊名称：《GigaScience》 | 2012年第-1期
- Methylome MeDIP-seq Epigenetics Epigenomics DNA methylation Computational pipeline MeDUSA;
61.The future of DNA sequence archiving

机译：DNA序列归档的未来
- 作者：Guy Cochrane;Charles E Cook;Ewan Birney
- 期刊名称：《GigaScience》 | 2012年第-1期
- DNA Sequence Archive Compression Storage Image;
62.Large and linked in scientific publishing

机译：大型且与科学出版相关
- 作者：Laurie Goodman;Scott C Edmunds;Alexandra T Basford
- 期刊名称：《GigaScience》 | 2012年第-1期
63.Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family

机译：沉香树沉香（Lour。）Spreng的基因组序列：百里香科的第一个染色体级草图基因组
- 作者：Xupo Ding;Wenli Mei;Qiang Lin;Hao Wang;Jun Wang;Shiqing Peng;Huiliang Li;Jiahong Zhu;Wei Li;Pei Wang;Huiqin Chen;Wenhua Dong;Dong Guo;Caihong Cai;Shengzhuo Huang;Peng Cui;Haofu Dai
- 期刊名称：《GigaScience》 | 2020年第3期
- agarwood;
- chromosome-level genome assembly;
- Hi-C sequencing;
- annotation;
64.Chromosome-level genome assembly and annotation of the loquat (Eriobotrya japonica) genome

机译：lo基因组的染色体水平基因组组装和注释
- 作者：Shuang Jiang;Haishan An;Fangjie Xu;Xueying Zhang
- 期刊名称：《GigaScience》 | 2020年第3期
- loquat;
- genome assembly;
- Nanopore;
- Hi-C;
65.An image dataset related to automated macrophage detection in immunostained lymphoma tissue samples

机译：与免疫染色的淋巴瘤组织样本中自动巨噬细胞检测有关的图像数据集
- 作者：Marcus Wagner;Sarah Reinke;René Hänsel;Wolfram Klapper;Ulf-Dietrich Braumann
- 期刊名称：《GigaScience》 | 2020年第3期
- lymphoma;
- DLBCL;
- macrophage;
- multiple immunohistochemical staining;
- automated cell counting;
- ROF filtering;
- floating threshold;
- rule-based detection;
- image dataset;
66.Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi a plant with crassulacean acid metabolism

机译：光响应表达图谱揭示了卡拉桑酸代谢的植物Kalanchoëfedtschenkoi的光质量和强度的影响
- 作者：Jin Zhang;Rongbin Hu;Avinash Sreedasyam;Travis M Garcia;Anna Lipzen;Mei Wang;Pradeep Yerramsetty;Degao Liu;Vivian Ng;Jeremy Schmutz;John C Cushman;Anne M Borland;Asher Pasha;Nicholas J Provart;Jin-Gui Chen;Wellington Muchero;Gerald A Tuskan;Xiaohan Yang
- 期刊名称：《GigaScience》 | 2020年第3期
- eFP browser;
- gene atlas;
- transcriptome;
67.Chromosome-level genome assembly of Aldrichina grahami a forensically important blowfly

机译：法医重要的飞蝇Aldrichina grahami的染色体水平基因组装配
- 作者：Fanming Meng;Zhuoying Liu;Han Han;Dmitrijs Finkelbergs;Yangshuai Jiang;Mingfei Zhu;Yang Wang;Zongyi Sun;Chao Chen;Yadong Guo;Jifeng Cai
- 期刊名称：《GigaScience》 | 2020年第3期
- blowfly;
- necrophagous;
- forensic entomology;
- minimum postmortem interval;
- genome assembly;
68.De novo assembly of the cattle reference genome with single-molecule sequencing

机译：从头组装牛参考基因组的单分子测序
- 作者：Benjamin D Rosen;Derek M Bickhart;Robert D Schnabel;Sergey Koren;Christine G Elsik;Elizabeth Tseng;Troy N Rowan;Wai Y Low;Aleksey Zimin;Christine Couldrey;Richard Hall;Wenli Li;Arang Rhie;Jay Ghurye;Stephanie D McKay;Françoise Thibaud-Nissen;Jinna Hoffman;Brenda M Murdoch;Warren M Snelling;Tara G McDaneld;John A Hammond;John C Schwartz;Wilson Nandolo;Darren E Hagen;Christian Dreischer;Sebastian J Schultheiss;Steven G Schroeder;Adam M Phillippy;John B Cole;Curtis P Van Tassell;George Liu;Timothy P L Smith;Juan F Medrano
- 期刊名称：《GigaScience》 | 2020年第3期
- bovine genome;
- reference assembly;
- cattle;
- Hereford;
69.Interpretable and accurate prediction models for metagenomics data

机译：宏基因组学数据的可解释且准确的预测模型
- 作者：Edi Prifti;Yann Chevaleyre;Blaise Hanczar;Eugeni Belda;Antoine Danchin;Karine Clément;Jean-Daniel Zucker
- 期刊名称：《GigaScience》 | 2020年第3期
- prediction;
- interpretable models;
- metagenomics biomarkers;
- microbial ecosystems;
70.Introgression of Eastern Chinese and Southern Chinese haplotypes contributes to the improvement of fertility and immunity in European modern pigs

机译：华东和华南单倍型的渗入有助于提高欧洲现代猪的繁殖力和免疫力
- 作者：Hao Chen;Min Huang;Bin Yang;Zhongping Wu;Zheng Deng;Yong Hou;Jun Ren;Lusheng Huang
- 期刊名称：《GigaScience》 | 2020年第3期
- French Large White;
- disease resistance;
- reproductive performance;
- AHR;
- artificial introgression;
- gene;
71.A novel method for detecting morphologically similar crops and weeds based on the combination of contour masks and filtered Local Binary Pattern operators

机译：基于轮廓遮罩和滤波后的局部二值模式算子的形态相似作物和杂草检测新方法
- 作者：Vi Nguyen Thanh Le;Selam Ahderom;Beniamin Apopei;Kamal Alameh
- 期刊名称：《GigaScience》 | 2020年第3期
- precision agriculture;
- morphological operators;
- feature extraction;
- local binary patterns;
- contour masks;
- weed detection;
- computer vision;
72.*-DCC: A platform to collect annotate and explore a large variety of sequencing experiments

机译：* -DCC：一个收集注释和探索各种测序实验的平台
- 作者：Matthias Hörtenhuber;Abdul K Mukarram;Marcus H Stoiber;James B Brown;Carsten O Daub
- 期刊名称：《GigaScience》 | 2020年第3期
- databases;
- sequencing experiments;
- sample annotation;
- sequencing data annotation;
73.GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data

机译：GADMA：遗传算法可根据等位基因频谱数据推断多个人群的人口历史
- 作者：Ekaterina Noskova;Vladimir Ulyantsev;Klaus-Peter Koepfli;Stephen J O’Brien;Pavel Dobrynin
- 期刊名称：《GigaScience》 | 2020年第3期
- demographic inference;
- population genetics;
- genetic algorithm;
- allele frequency spectrum;
- genomics;
74.DeepPod: a convolutional neural network based quantification of fruit number in Arabidopsis

机译：DeepPod：基于卷积神经网络的拟南芥果实数量定量
- 作者：Azam Hamidinekoo;Gina A Garzón-Martínez;Morteza Ghahremani;Fiona M K Corke;Reyer Zwiggelaar;John H Doonan;Chuan Lu
- 期刊名称：《GigaScience》 | 2020年第3期
- plant phenotyping;
- image analysis;
- deep learning;
- object detection;
- fruit counting;
75.PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA ITS and COI marker genes

机译：PEMA：用于16S / 18S核糖体RNAITS和COI标记基因的环境DNA元条形码分析的灵活管道
- 作者：Haris Zafeiropoulos;Ha Quoc Viet;Katerina Vasileiadou;Antonis Potirakis;Christos Arvanitidis;Pantelis Topalis;Christina Pavloudi;Evangelos Pafilis
- 期刊名称：《GigaScience》 | 2020年第3期
- pipeline;
- container;
- Docker;
- singularity;
- high performance computing;
- HPC;
- eDNA;
- metabarcoding;
76.Correction to: High-coverage genomes to elucidate the evolution of penguins

机译：更正为：高覆盖基因组阐明企鹅的进化
- 作者：Hailin Pan;Theresa L Cole;Xupeng Bi;Miaoquan Fang;Chengran Zhou;Zhengtao Yang;Daniel T Ksepka;Tom Hart;Juan L Bouzat;Lisa S Argilla;Mads F Bertelsen;P Dee Boersma;Charles-Andre Bost;Yves Cherel;Peter Dann;Steven R Fiddaman;Pauline Howard;Kim Labuschagne;Thomas Mattern;Gary Miller;Patricia Parker;Richard A Phillips;Petra Quillfeldt;Peter G Ryan;Helen Taylor;David R Thompson;Melanie J Young;Martin R Ellegaard;M Thomas P Gilbert;Mikkel-Holger S Sinding;George Pacheco;Lara D Shepherd;Alan J D Tennyson;Stefanie Grosser;Emily Kay;Lisa J Nupen;Ursula Ellenberg;David M Houston;Andrew Hart Reeve;Kathryn Johnson;Juan F Masello;Thomas Stracke;Bruce McKinlay;Pablo Garc´ıa Borboroglu;De-Xing Zhang;Guojie Zhang
- 期刊名称：《GigaScience》 | 2020年第3期
77.Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle

机译：由a牛和牛的单一种间F1杂种组装而成的连续染色体规模单倍型
- 作者：Edward S Rice;Sergey Koren;Arang Rhie;Michael P Heaton;Theodore S Kalbfleisch;Timothy Hardy;Peter H Hackett;Derek M Bickhart;Benjamin D Rosen;Brian Vander Ley;Nicholas W Maurer;Richard E Green;Adam M Phillippy;Jessica L Petersen;Timothy P L Smith
- 期刊名称：《GigaScience》 | 2020年第4期
- genome assembly;
- phasing;
78.Artifact-free whole-slide imaging with structured illumination microscopy and Bayesian image reconstruction

机译：具有结构化照明显微镜和贝叶斯图像重建的无伪像全幻灯片成像
- 作者：Karl A Johnson;Guy M Hagen
- 期刊名称：《GigaScience》 | 2020年第4期
- structured illumination microscopy;
- SIM;
- image stitching;
- Bayesian methods;
- MAP-SIM;
- SIMToolbox;
- histopathology;
- cancer;
79.Chromosome-level reference genome of the jellyfish Rhopilema esculentum

机译：水母Rhopilema esculentum的染色体水平参考基因组
- 作者：Yunfeng Li;Lei Gao;Yongjia Pan;Meilin Tian;Yulong Li;Chongbo He;Ying Dong;Yamin Sun;Zunchun Zhou
- 期刊名称：《GigaScience》 | 2020年第4期
- jellyfish;
80.Species-level evaluation of the human respiratory microbiome

机译：人类呼吸微生物组的物种水平评估
- 作者：Olufunmilola Ibironke;Lora R McGuinness;Shou-En Lu;Yaquan Wang;Sabiha Hussain;Clifford P Weisel;Lee J Kerkhof
- 期刊名称：《GigaScience》 | 2020年第4期
81.Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads optical mapping and Hi-C

机译：Canfam_GSD：结合使用长读光学作图和Hi-C德国牧羊犬（Canis lupus Friendlyis）的从头染色体长度基因组组装
- 作者：Matt A Field;Benjamin D Rosen;Olga Dudchenko;Eva K F Chan;Andre E Minoche;Richard J Edwards;Kirston Barton;Ruth J Lyons;Daniel Enosi Tuipulotu;Vanessa M Hayes;Arina D. Omer;Zane Colaric;Jens Keilwagen;Ksenia Skvortsova;Ozren Bogdanovic;Martin A Smith;Erez Lieberman Aiden;Timothy P L Smith;Robert A Zammit;J William O Ballard
- 期刊名称：《GigaScience》 | 2020年第4期
- Hi-C;
- long-read sequencing;
- optical mapping;
82.Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

机译：多组学可视化平台：用于多组学数据可视化和探索的可扩展Galaxy插件
- 作者：Thomas McGowan;James E Johnson;Praveen Kumar;Ray Sajulga;Subina Mehta;Pratik D Jagtap;Timothy J Griffin
- 期刊名称：《GigaScience》 | 2020年第4期
- proteogenomics;
- mass spectrometry;
- proteomics;
- transcriptomics;
- RNA-Seq;
- visualization;
- Galaxy;
- Integrated Genomics Viewer;
83.ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data

机译：ShinyLearner：一种容器化的基准测试工具用于对表格数据进行机器学习分类
- 作者：Stephen R Piccolo;Terry J Lee;Erica Suh;Kimball Hill
- 期刊名称：《GigaScience》 | 2020年第4期
- machine learning;
- supervised learning;
- classification;
- software containers;
- benchmark;
- feature selection;
- algorithm optimization;
- model selection;
84.Binning unassembled short reads based on k-mer abundance covariance using sparse coding

机译：使用稀疏编码基于k-mer丰度协方差对未组装的短读进行分箱
- 作者：Olexiy Kyrgyzov;Vincent Prost;Stéphane Gazut;Bruno Farcy;Thomas Brüls
- 期刊名称：《GigaScience》 | 2020年第4期
- metagenomics;
- human microbiome;
- sequence binning;
- sparse coding;
85.Laniakea: an open solution to provide Galaxy on-demand instances over heterogeneous cloud infrastructures

机译：Laniakea：一种开放式解决方案可通过异构云基础架构提供按需 Galaxy实例
- 作者：Marco Antonio Tangaro;Giacinto Donvito;Marica Antonacci;Matteo Chiara;Pietro Mandreoli;Graziano Pesole;Federico Zambelli
- 期刊名称：《GigaScience》 | 2020年第4期
- galaxy;
- on-demand;
- cloud;
- workflow;
- PaaS;
86.Chromosomal-level reference genome of Chinese peacock butterfly (Papilio bianor) based on third-generation DNA sequencing and Hi-C analysis

机译：基于第三代DNA测序和Hi-C分析的孔雀蝴蝶染色体水平参考基因组
- 作者：Sihan Lu;Jie Yang;Xuelei Dai;Feiang Xie;Jinwu He;Zhiwei Dong;Junlai Mao;Guichun Liu;Zhou Chang;Ruoping Zhao;Wenting Wan;Ru Zhang;Yuan Li;Wen Wang;Xueyan Li
- 期刊名称：《GigaScience》 | 2019年第11期
87.A multi-day and multi-band dataset for a steady-state visual-evoked potential–based brain-computer interface

机译：一个多天多波段的数据集用于稳态视觉诱发电位的人机界面
- 作者：Ga-Young Choi;Chang-Hee Han;Young-Jin Jung;Han-Jeong Hwang
- 期刊名称：《GigaScience》 | 2019年第11期
88.Trochodendron aralioides the first chromosome-level draft genome in Trochodendrales and a valuable resource for basal eudicot research

机译：Trochodendron aralioidesTrochodendrales中第一个染色体水平的基因组草图是基础真双子叶植物研究的宝贵资源
- 作者：Joeri S Strijk;Damien D Hinsinger;Fengping Zhang;Kunfang Cao
- 期刊名称：《GigaScience》 | 2019年第11期
- chromosome-level genome assembly;
- Hi-C assembly;
- basal eudicot;
89.Assessment of human diploid genome assembly with 10x Linked-Reads data

机译：使用10倍Linked-Reads数据评估人类二倍体基因组装配
- 作者：Lu Zhang;Xin Zhou;Ziming Weng;Arend Sidow
- 期刊名称：《GigaScience》 | 2019年第11期
- 10x Linked-Read sequencing;
90.Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

机译：共享可互操作的工作流来源：最佳实践及其在CWLProv中的实际应用的回顾
- 作者：Farah Zaib Khan;Stian Soiland-Reyes;Richard O Sinnott;Andrew Lonie;Carole Goble;Michael R Crusoe
- 期刊名称：《GigaScience》 | 2019年第11期
- provenance;
- Common Workflow Language;
- CWL;
- Research Object;
- RO;
- BagIt;
- interoperability;
- scientific workflows;
- containers;
91.High-throughput phenotyping with deep learning gives insight into the genetic architecture of flowering time in wheat

机译：带有深度学习的高通量表型可以深入了解小麦开花时间的遗传结构
- 作者：Xu Wang;Hong Xuan;Byron Evers;Sandesh Shrestha;Robert Pless;Jesse Poland
- 期刊名称：《GigaScience》 | 2019年第11期
- convolutional neural network;
- deep learning;
- genetic architecture;
- plant breeding;
- wheat;
92.RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures

机译：RootNav 2.0：用于自动导航复杂植物根架构的深度学习
- 作者：Robail Yasrab;Jonathan A Atkinson;Darren M Wells;Andrew P French;Tony P Pridmore;Michael P Pound
- 期刊名称：《GigaScience》 | 2019年第11期
- convolutional neural network (CNN);
- plant phenotyping;
- computer vision;
- encoder-decoder;
- root system;
93.RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements

机译：RepeatFiller新发现了排列重复序列的兆碱基并改进了保守的非外显元素的注释
- 作者：Ekaterina Osipova;Nikolai Hecker;Michael Hiller
- 期刊名称：《GigaScience》 | 2019年第11期
- transposons;
- conserved non-exonic elements;
- genome alignments;
94.Deep learning for clustering of multivariate clinical patient trajectories with missing values

机译：深度学习用于对具有缺失值的多元临床患者轨迹进行聚类
- 作者：Johann de Jong;Mohammad Asif Emon;Ping Wu;Reagon Karki;Meemansa Sood;Patrice Godard;Ashar Ahmad;Henri Vrooman;Martin Hofmann-Apitius;Holger Fröhlich
- 期刊名称：《GigaScience》 | 2019年第11期
- patient stratification;
- deep learning;
- multivariate time series;
- multivariate longitudinal data;
- clustering;
95.Correction to: Transcriptome of the caribbean stony coral Porites astreoides from three developmental stages

机译：更正为：来自三个发育阶段的加勒比石质珊瑚多孔质Astreoides的转录组
- 作者：Tamer A Mansour;Joshua J C Rosenthal;C Titus Brown;Loretta M Roberson
- 期刊名称：《GigaScience》 | 2019年第11期
96.Leveraging multiple transcriptome assembly methods for improved gene structure annotation

机译：利用多种转录组组装方法改善基因结构注释
- 作者：Luca Venturini;Shabhonam Caim;Gemy George Kaithakottil;Daniel Lee Mapleson;David Swarbreck
- 期刊名称：《GigaScience》 | 2018年第8期
- RNA-seq;
- transcriptome;
- assembly;
- genome annotation;
97.Data detectives self-love and humility: a research parasites perspective

机译：数据侦探自爱和谦卑：研究寄生虫的观点
- 作者：Claire Duvallet
- 期刊名称：《GigaScience》 | 2020年第1期
98.A highly contiguous genome assembly of the bat hawkmoth Hyles vespertilio (Lepidoptera: Sphingidae)

机译：蝙蝠天蛾Hyles vespertilio（鳞翅目：鞘翅目）的高度连续的基因组组装
- 作者：Martin Pippel;David Jebb;Franziska Patzold;Sylke Winkler;Heiko Vogel;Gene Myers;Michael Hiller;Anna K Hundsdoerfer
- 期刊名称：《GigaScience》 | 2020年第1期
- genome assembly;
- PacBio long reads;
- hawkmoth–silk moth comparison;
- gene annotation;
99.A draft genome sequence of the elusive giant squid Architeuthis dux

机译：难以捉摸的巨型鱿鱼Architeuthis dux的基因组序列草图
- 作者：Rute R da Fonseca;Alvarina Couto;Andre M Machado;Brona Brejova;Carolin B Albertin;Filipe Silva;Paul Gardner;Tobias Baril;Alex Hayward;Alexandre Campos;Ângela M Ribeiro;Inigo Barrio-Hernandez;Henk-Jan Hoving;Ricardo Tafur-Jimenez;Chong Chu;Barbara Frazão;Bent Petersen;Fernando Peñaloza;Francesco Musacchia;Graham C Alexander;Jr;Hugo Osório;Inger Winkelmann;Oleg Simakov;Simon Rasmussen;M Ziaur Rahman;Davide Pisani;Jakob Vinther;Erich Jarvis;Guojie Zhang;Jan M Strugnell;L Filipe C Castro;Olivier Fedrigo;Mateus Patricio;Qiye Li;Sara Rocha;Agostinho Antunes;Yufeng Wu;Bin Ma;Remo Sanges;Tomas Vinar;Blagoy Blagoev;Thomas Sicheritz-Ponten;Rasmus Nielsen;M Thomas P Gilbert
- 期刊名称：《GigaScience》 | 2020年第1期
- cephalopod;
- invertebrate;
- genome assembly;
100.A genome alignment of 120 mammals highlights ultraconserved element variability and placenta-associated enhancers

机译：120个哺乳动物的基因组比对突显了超保守元素变异性和胎盘相关增强子
- 作者：Nikolai Hecker;Michael Hiller
- 期刊名称：《GigaScience》 | 2020年第1期
- genome alignment;
- comparative gene annotation;
- ultraconserved elements;
- enhancers;
- mammals;