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首页> 外文期刊>Journal of molecular modeling >Fast and accurate hybrid QM//MM approach for computing anharmonic corrections to vibrational frequencies
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Fast and accurate hybrid QM//MM approach for computing anharmonic corrections to vibrational frequencies

机译:快速准确的混合QM // MM方法,用于计算对振动频率的谐波校正

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摘要

We have developed and tested a new timeeffective and accurate hybrid QM//MM generalized second-order vibrational perturbation theory (GVPT2) approach. In this approach, two different levels of theory were used, a high level one (DFT) for computing the harmonic spectrum and a lower fast one (Molecular Mechanic) for the anharmonic corrections. To validate our approach, we used B2PLYP/def2-TZVPP as the high-level method, and the MMFF94 method for the anharmonic corrections as the low-level method. The calculations were carried out on 28 molecules (containing from 2 to 47 atoms) covering a broad range of vibrational modes present in organic molecules. We find that this fast hybrid method reproduces the experimental frequencies with a very good accuracy for organic and bio-molecules. The root-mean-square deviation (RMSD) is about 27 cm(-1) while the full B3LYP/SNSD simulation reproduces the experimental values with a RMSD of about 41 cm(-1). Concerning the computational time, the hybrid B2PLYP//MMFF94 approach considerably outperforms the full B3LYP/SNSD: for the larger molecule of our set (a dipeptide containing 47 atoms), the anharmonic corrections are 2300 times faster using hybrid MMFF94 rather than full B3LYP, which represents an additional computation time to the harmonic calculation of merely 9 %, instead of 32100 % with the full B3LYP approach. This time-effective and accurate alternative to the traditional GVPT2 approach will allow the spectroscopy community to explore anharmonic effects in larger biomolecules, which are generally unaffordable.
机译:我们已经开发并测试了一种新的省时,精确的混合QM // MM广义二阶振动摄动理论(GVPT2)方法。在这种方法中,使用了两种不同的理论水平,一种是高次谐波理论(DFT),用于计算谐波频谱,另一种是低速快速理论(分子力学),用于非谐波校正。为了验证我们的方法,我们使用B2PLYP / def2-TZVPP作为高级方法,将用于非谐波校正的MMFF94方法用作低级方法。计算是对28个分子(包含2到47个原子)进行的,这些分子涵盖了有机分子中广泛的振动模式。我们发现,这种快速混合方法可以非常准确地重现有机和生物分子的实验频率。均方根偏差(RMSD)约为27 cm(-1),而完整的B3LYP / SNSD模拟则再现了RMSD约为41 cm(-1)的实验值。关于计算时间,混合B2PLYP // MMFF94方法大大优于完整的B3LYP / SNSD:对于我们集合中的较大分子(包含47个原子的二肽),使用混合MMFF94而不是完整的B3LYP,非谐波校正的速度要快2300倍,这代表谐波计算只需要9%的额外计算时间,而不是完整的B3LYP方法的32100%。这种有效且准确的替代传统GVPT2方法的方法将使光谱学界能够探索通常难以承受的较大生物分子的非谐效应。

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