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Occurrence and molecular characterization of wheat streak mosaic virus in wheat in Serbia

机译:塞尔维亚小麦小麦条纹马赛克病毒的发生及分子特征

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The wheat streak mosaic virus (WSMV), vectored by the wheat curl mite, is globally distributed and threatens wheat production worldwide. Since its first occurrence in Serbia in the 1960s, WSMV presence has not been monitored. In 2019, a total of 62 samples of fi ve wheat cultivars from eight locations in Serbia were collected and tested for the presence of nine common wheat viruses: WSMV, barley yellow dwarf virus-PAV, -MAV, -SGV, and -RMV, cereal yellow dwarf virus-RPV, wheat spindle streak virus, brome mosaic virus, and soil-borne wheat mosaic virus, using individual or multiplex RT-PCR. WSMV was detected in 58.1% of the tested samples in seven wheat crops at five different locations. Species-specific primers failed to detect the presence of the other eight tested viruses. For further confirmation of WSMV, RT-PCR with the WS8166F/WS8909R primers covering the coat protein (CP) gene was carried out for both amplification and sequencing. The amplified product of the correct predicted size (750 bp) derived from four selected isolates, 98-19, 99-19, 102-19 and 120-19, was sequenced and deposited in GenBank (MT461299, MT461300, MT461301 and MT461302, respectively). Serbian WSMV isolates showed very high nucleotide identity (98.16-99.02%) and shared a deletion of triplet codon GCA at nucleotide position 8412- 8414 resulting in deletion of glycine amino acid (Gly2761). Phylogenetic analysis conducted on CP gene sequences revealed the existence of four clades, named A, B, C and D, and one recently introduced clade B1. All Serbian wheat WSMV isolates grouped into clade B together with other European isolates and one isolate from Iran. The results of this study provide the first insight into molecular characterisation of Serbian WSMV isolates, indicating their close relationship with other European isolates and existence of a single genotype in the country. Phylogenetic analysis also confirms the dispersal of WSMV isolates throughout Europe from a single locus.
机译:由小麦卷曲螨虫的小麦条纹马赛克病毒(WSMV)全球范围内的全球分布并威胁着全球麦芽生产。自20世纪60年代塞尔维亚的第一次出现以来,WSMV存在尚未被监测。 2019年,收集了来自塞尔维亚8个地点的62种五个小麦品种样本,并测试了九种常见小麦病毒的存在:WSMV,大麦黄矮化病毒-Pav,-MAV,-SGV和-RMV,谷物黄矮化病毒-RPV,小麦主轴条纹病毒,雀斑病毒和土壤麦小麦马赛瑟病毒,使用个体或多重RT-PCR。在五个不同的位置,在七个小麦作物中检测到58.1%的测试样品中检测到WSMV。物种特异性引物未能检测到其他八个测试病毒的存在。为了进一步确认WSMV,对覆盖涂层蛋白(CP)基因的WS8166F / WS8909R引物进行RT-PCR,用于扩增和测序。衍生自四种选定分离株,98-19,99-19,102-19和120-19的正确预测尺寸(750bp)的扩增产物分别在Genbank(MT461299,MT461300,MT461301和MT461302中进行测序并沉积)。塞尔维亚WSMV分离物显示出非常高的核苷酸同一性(98.16-99.02%),并在核苷酸位置8412-8414处共享三重氏菌密码子GCA,导致甘氨酸氨基酸(Gly2761)缺失。在CP基因序列上进行的系统发育分析显示出四个片状的存在,名为A,B,C和D,并且最近引入的疏水板B1。所有塞尔维亚小麦WSMV与其他欧洲分离株和伊朗的一个孤立一起分组成Clade B.该研究的结果提供了塞尔维亚WSMV分离株分子表征的首次见解,表明其与其他欧洲孤立株的密切关系和该国的单一基因型的存在。系统发育分析还证实了从单个基因座的欧洲整个欧洲的散发算法。

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