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Identifying Acute Low Back Pain Episodes in Primary Care Practice From Clinical Notes: Observational Study

机译:从临床备注中识别初级保健实践中的急性低腰疼痛事件:观察研究

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Background Acute and chronic low back pain (LBP) are different conditions with different treatments. However, they are coded in electronic health records with the same International Classification of Diseases, 10th revision (ICD-10) code (M54.5) and can be differentiated only by retrospective chart reviews. This prevents an efficient definition of data-driven guidelines for billing and therapy recommendations, such as return-to-work options. Objective The objective of this study was to evaluate the feasibility of automatically distinguishing acute LBP episodes by analyzing free-text clinical notes. Methods We used a dataset of 17,409 clinical notes from different primary care practices; of these, 891 documents were manually annotated as acute LBP and 2973 were generally associated with LBP via the recorded ICD-10 code. We compared different supervised and unsupervised strategies for automated identification: keyword search, topic modeling, logistic regression with bag of n-grams and manual features, and deep learning (a convolutional neural network-based architecture [ConvNet]). We trained the supervised models using either manual annotations or ICD-10 codes as positive labels. Results ConvNet trained using manual annotations obtained the best results with an area under the receiver operating characteristic curve of 0.98 and an F score of 0.70. ConvNet’s results were also robust to reduction of the number of manually annotated documents. In the absence of manual annotations, topic models performed better than methods trained using ICD-10 codes, which were unsatisfactory for identifying LBP acuity. Conclusions This study uses clinical notes to delineate a potential path toward systematic learning of therapeutic strategies, billing guidelines, and management options for acute LBP at the point of care.
机译:背景技术急性和慢性低腰疼痛(LBP)是不同治疗的不同条件。但是,它们在具有相同的国际疾病分类的电子健康记录中编码,第10次修订(ICD-10)代码(M54.5),并且只能通过回顾性图表评论来区分。这可以防止有效的定义数据驱动的结算和治疗建议,例如返回工作选项。目的本研究的目的是通过分析自由文本临床票据来评估自动区分急性LBP剧集的可行性。方法采用来自不同初级保健实践的17,409张临床笔记的数据集;其中,由于急性LBP和2973通常通过记录的ICD-10码与LBP与LBP相关联。我们比较了自动识别的不同监督和无人监督的策略:关键字搜索,主题建模,带有n-grams和手动功能的袋子的逻辑回归,以及深度学习(基于卷积神经网络的架构[convnet])。我们使用手动注释或ICD-10代码作为正标签培训了监督模型。结果使用手动注释培训的ConvNet获得了最佳效果,接​​收器的接收器操作特性曲线为0.98,F分数为0.70。 ConvNet的结果也强大,以减少手动注释文件的数量。在没有手动注释的情况下,主题模型比使用ICD-10代码训练的方法更好地执行,这对于识别LBP敏锐度是不令人满意的。结论本研究采用临床票据在护理点来描写旨在系统学习治疗策略,结算指南和管理方案的潜在路径。

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