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Detecting and segmenting cell nuclei in two-dimensional microscopy images

机译:在二维显微镜图像中检测和分割细胞核

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Introduction&58; Cell nuclei are important indicators of cellular processes and diseases. Segmentation is an essential stage in systems for quantitative analysis of nuclei extracted from microscopy images. Given the wide variety of nuclei appearance in different organs and staining procedures, a plethora of methods have been described in the literature to improve the segmentation accuracy and robustness. Materials and Methods&58; In this paper, we propose an unsupervised method for cell nuclei detection and segmentation in two-dimensional microscopy images. The nuclei in the image are detected automatically using a matching-based method. Next, edge maps are generated at multiple image blurring levels followed by edge selection performed in polar space. The nuclei contours are refined iteratively in the constructed edge pyramid. The validation study was conducted over two cell nuclei datasets with manual labeling, including 25 hematoxylin and eosin-stained liver histopathology images and 35 Papanicolaou-stained thyroid images. Results&58; The nuclei detection accuracy was measured by miss rate, and the segmentation accuracy was evaluated by two types of error metrics. Overall, the nuclei detection efficiency of the proposed method is similar to the supervised template matching method. In comparison to four existing state-of-the-art segmentation methods, the proposed method performed the best with average segmentation error 10.34% and 0.33 measured by area error rate and normalized sum of distances (×10). Conclusion&58; Quantitative analysis showed that the method is automatic and accurate when segmenting cell nuclei from microscopy images with noisy background and has the potential to be used in clinic settings.
机译:简介&58;细胞核是细胞进程和疾病的重要指标。在从显微镜图像中提取核的定量分析系统中,分割是必不可少的步骤。考虑到在不同器官中不同的核外观和染色程序,文献中已经描述了许多方法来提高分割的准确性和鲁棒性。材料与方法&58;在本文中,我们提出了一种在二维显微镜图像中进行细胞核检测和分割的无监督方法。使用基于匹配的方法自动检测图像中的核。接下来,在多个图像模糊级别生成边缘贴图,然后在极性空间中执行边缘选择。核轮廓在构造的棱锥中迭代地细化。验证研究是在两个带有手动标记的细胞核数据集上进行的,包括25个苏木精和曙红染色的肝脏组织病理学图像以及35个帕潘尼古拉染色的甲状腺图像。结果&58;通过漏检率测量核检测精度,并通过两种类型的误差指标评估分割精度。总体而言,该方法的核检测效率与监督模板匹配方法相似。与四种现有的最先进的分割方法相比,所提出的方法表现最佳,平均分割误差为10.34%,通过区域误差率和距离的归一化总和(×10)测得的平均分割误差为0.33。结论&58;定量分析表明,该方法从具有嘈杂背景的显微镜图像中分割细胞核时是自动且准确的,并且有可能在临床中使用。

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