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A Component-Based FPGA Design Framework for Neuronal Ion Channel Dynamics Simulations

机译:基于组件的神经元离子通道动力学仿真的FPGA设计框架

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摘要

Neuron-machine interfaces such as dynamic clamp and brain-implantable neuroprosthetic devices require real-time simulations of neuronal ion channel dynamics. Field Programmable Gate Array (FPGA) has emerged as a high-speed digital platform ideal for such application-specific computations. We propose an efficient and flexible component-based FPGA design framework for neuronal ion channel dynamics simulations, which overcomes certain limitations of the recently proposed memory-based approach. A parallel processing strategy is used to minimize computational delay, and a hardware-efficient factoring approach for calculating exponential and division functions in neuronal ion channel models is used to conserve resource consumption. Performances of the various FPGA design approaches are compared theoretically and experimentally in corresponding implementations of the AMPA and NMDA synaptic ion channel models. Our results suggest that the component-based design framework provides a more memory economic solution as well as more efficient logic utilization for large word lengths, whereas the memory-based approach may be suitable for time-critical applications where a higher throughput rate is desired.
机译:神经元机接口(例如动态钳夹和可植入大脑的人工神经装置)需要对神经元离子通道动力学进行实时仿真。现场可编程门阵列(FPGA)已经成为一种高速数字平台,非常适合此类专用计算。我们为神经元离子通道动力学仿真提出了一种高效且灵活的基于组件的FPGA设计框架,该框架克服了最近提出的基于内存的方法的某些局限性。使用并行处理策略来最大程度地减少计算延迟,并使用一种用于计算神经元离子通道模型中指数函数和除法函数的硬件有效分解方法来节省资源消耗。在AMPA和NMDA突触离子通道模型的相应实现中,从理论上和实验上比较了各种FPGA设计方法的性能。我们的结果表明,基于组件的设计框架为大字长提供了更经济的内存解决方案以及更有效的逻辑利用率,而基于内存的方法可能适用于需要更高吞吐率的时间关键型应用。

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