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A Pulse Coupled Neural Network Segmentation Algorithm for Reflectance Confocal Images of Epithelial Tissue

机译:上皮组织反射共聚焦图像的脉冲耦合神经网络分割算法

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摘要

Automatic segmentation of nuclei in reflectance confocal microscopy images is critical for visualization and rapid quantification of nuclear-to-cytoplasmic ratio, a useful indicator of epithelial precancer. Reflectance confocal microscopy can provide three-dimensional imaging of epithelial tissue in vivo with sub-cellular resolution. Changes in nuclear density or nuclear-to-cytoplasmic ratio as a function of depth obtained from confocal images can be used to determine the presence or stage of epithelial cancers. However, low nuclear to background contrast, low resolution at greater imaging depths, and significant variation in reflectance signal of nuclei complicate segmentation required for quantification of nuclear-to-cytoplasmic ratio. Here, we present an automated segmentation method to segment nuclei in reflectance confocal images using a pulse coupled neural network algorithm, specifically a spiking cortical model, and an artificial neural network classifier. The segmentation algorithm was applied to an image model of nuclei with varying nuclear to background contrast. Greater than 90% of simulated nuclei were detected for contrast of 2.0 or greater. Confocal images of porcine and human oral mucosa were used to evaluate application to epithelial tissue. Segmentation accuracy was assessed using manual segmentation of nuclei as the gold standard.
机译:反射共聚焦显微镜图像中的细胞核自动分割对于可视化和快速定量核对细胞质的比率至关重要,核对细胞质的比率是上皮癌变的有用指标。反射共聚焦显微镜可以提供亚细胞分辨率的体内上皮组织的三维成像。从共聚焦图像获得的作为深度的函数的核密度或核质比的变化可用于确定上皮癌的存在或阶段。然而,低的核对背景对比度,在更大的成像深度处的低分辨率以及核的反射信号的显着变化使定量核与细胞质比率所需的分割变得复杂。在这里,我们提出了一种自动分割方法,用于使用脉冲耦合神经网络算法(特别是尖峰皮质模型)和人工神经网络分类器对反射共聚焦图像中的核进行分段。该分割算法被应用于具有变化的核与背景对比度的核的图像模型。检测到大于90%的模拟核的对比度为2.0或更高。猪和人口腔粘膜的共聚焦图像用于评估在上皮组织中的应用。使用手动分割核作为金标准评估分割精度。

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