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A rule-based named-entity recognition method for knowledge extraction of evidence-based dietary recommendations

机译:基于规则的命名实体识别方法用于基于证据的饮食推荐知识的提取

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摘要

Evidence-based dietary information represented as unstructured text is a crucial information that needs to be accessed in order to help dietitians follow the new knowledge arrives daily with newly published scientific reports. Different named-entity recognition (NER) methods have been introduced previously to extract useful information from the biomedical literature. They are focused on, for example extracting gene mentions, proteins mentions, relationships between genes and proteins, chemical concepts and relationships between drugs and diseases. In this paper, we present a novel NER method, called drNER, for knowledge extraction of evidence-based dietary information. To the best of our knowledge this is the first attempt at extracting dietary concepts. DrNER is a rule-based NER that consists of two phases. The first one involves the detection and determination of the entities mention, and the second one involves the selection and extraction of the entities. We evaluate the method by using text corpora from heterogeneous sources, including text from several scientifically validated web sites and text from scientific publications. Evaluation of the method showed that drNER gives good results and can be used for knowledge extraction of evidence-based dietary recommendations.
机译:以非结构化文本表示的循证饮食信息是一项至关重要的信息,需要它来访问,以帮助营养师跟踪新发布的科学报告每天所掌握的新知识。先前已经引入了不同的命名实体识别(NER)方法,以从生物医学文献中提取有用的信息。他们专注于例如提取基因提及,蛋白质提及,基因与蛋白质之间的关系,化学概念以及药物与疾病之间的关系。在本文中,我们提出了一种称为drNER的新型NER方法,用于基于证据的饮食信息的知识提取。据我们所知,这是提取饮食概念的首次尝试。 DrNER是基于规则的NER,分为两个阶段。第一个涉及对提及的实体的检测和确定,第二个涉及对实体的选择和提取。我们通过使用来自不同来源的文本语料库(包括来自多个经过科学验证的网站的文本和来自科学出版物的文本)来评估该方法。该方法的评估表明,drNER可获得良好的结果,可用于基于证据的饮食建议的知识提取。

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