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Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow

机译:基于半自动化管理工作流程的科学文献构建抗菌肽-药物组合网络

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摘要

Considerable research efforts are being invested in the development of novel antimicrobial therapies effective against the growing number of multi-drug resistant pathogens. Notably, the combination of different agents is increasingly explored as means to exploit and improve individual agent actions while minimizing microorganism resistance. Although there are several databases on antimicrobial agents, scientific literature is the primary source of information on experimental antimicrobial combination testing. This work presents a semi-automated database curation workflow that supports the mining of scientific literature and enables the reconstruction of recently documented antimicrobial combinations. Currently, the database contains data on antimicrobial combinations that have been experimentally tested against Pseudomonas aeruginosa, Staphylococcus aureus, Escherichia coli, Listeria monocytogenes and Candida albicans, which are prominent pathogenic organisms and are well-known for their wide and growing resistance to conventional antimicrobials. Researchers are able to explore the experimental results for a single organism or across organisms. Likewise, researchers may look into indirect network associations and identify new potential combinations to be tested. The database is available without charges.>Database URL:
机译:正在投入大量的研究努力来开发对多种耐药性病原体日益增长有效的新型抗菌疗法。值得注意的是,越来越多地探索不同试剂的组合作为在最小化微生物抗性的同时开发和改善单个试剂作用的手段。尽管有几个有关抗菌剂的数据库,但科学文献是有关实验性抗菌剂联合检测的主要信息来源。这项工作提出了一种半自动化的数据库管理工作流程,该流程支持科学文献的挖掘,并能够重建最近记录的抗菌药物组合。目前,该数据库包含有关抗微生物组合的数据,这些组合已通过铜绿假单胞菌,金黄色葡萄球菌,大肠杆菌,单核细胞增生性李斯特菌和白色念珠菌进行了实验测试,它们是重要的致病性生物,以其对常规抗菌剂的广泛耐药性和不断增长的耐药性而闻名。研究人员能够探索单个生物或跨多个生物的实验结果。同样,研究人员可能会研究间接网络关联并确定要测试的新潜在组合。该数据库免费提供。>数据库URL:

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