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Digital Holographic Microscopy a Method for Detection of Microorganisms in Plume Samples from Enceladus and Other Icy Worlds

机译:数字全息显微术一种检测土生土和其他冰冷世界羽状样品中微生物的方法

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摘要

Detection of extant microbial life on Earth and elsewhere in the Solar System requires the ability to identify and enumerate micrometer-scale, essentially featureless cells. On Earth, bacteria are usually enumerated by culture plating or epifluorescence microscopy. Culture plates require long incubation times and can only count culturable strains, and epifluorescence microscopy requires extensive staining and concentration of the sample and instrumentation that is not readily miniaturized for space. Digital holographic microscopy (DHM) represents an alternative technique with no moving parts and higher throughput than traditional microscopy, making it potentially useful in space for detection of extant microorganisms provided that sufficient numbers of cells can be collected. Because sample collection is expected to be the limiting factor for space missions, especially to outer planets, it is important to quantify the limits of detection of any proposed technique for extant life detection. Here we use both laboratory and field samples to measure the limits of detection of an off-axis digital holographic microscope (DHM). A statistical model is used to estimate any instrument's probability of detection at various bacterial concentrations based on the optical performance characteristics of the instrument, as well as estimate the confidence interval of detection. This statistical model agrees well with the limit of detection of 103 cells/mL that was found experimentally with laboratory samples. In environmental samples, active cells were immediately evident at concentrations of 104 cells/mL. Published estimates of cell densities for Enceladus plumes yield up to 104 cells/mL, which are well within the off-axis DHM's limits of detection to confidence intervals greater than or equal to 95%, assuming sufficient sample volumes can be collected. The quantitative phase imaging provided by DHM allowed minerals to be distinguished from cells. Off-axis DHM's ability for rapid low-level bacterial detection and counting shows its viability as a technique for detection of extant microbial life provided that the cells can be captured intact and delivered to the sample chamber in a sufficient volume of liquid for imaging. Key Words: In situ life detection—Extant microorganisms—Holographic microscopy—Ocean Worlds—Enceladus—Imaging. Astrobiology 17, 913–925.
机译:要检测地球和太阳系其他地方的现存微生物生命,需要具有识别和枚举微米级,本质上无特征的细胞的能力。在地球上,细菌通常通过培养平板或落射荧光显微镜进行计数。培养板需要较长的孵育时间,并且只能计数可培养的菌株,而落射荧光显微镜需要对样本和仪器进行大量染色和浓缩,而这些样本和仪器在空间上不易小型化。数字全息显微镜(DHM)代表了一种替代技术,它没有运动部件,并且比传统显微镜具有更高的通量,如果可以收集到足够数量的细胞,则其在空间中可用于检测现存微生物。由于样品的收集被认为是空间飞行任务的限制因素,尤其是对外行星的飞行任务,因此量化任何提出的现有生命检测技术的检测极限非常重要。在这里,我们使用实验室样本和现场样本来测量离轴数字全息显微镜(DHM)的检测极限。统计模型用于根据仪器的光学性能特征来估计在各种细菌浓度下任何仪器的检测概率,并估算检测的置信区间。该统计模型与实验室样品通过实验发现的10 3 细胞/ mL的检出限非常吻合。在环境样品中,浓度为10 4 细胞/ mL的活性细胞立即可见。公开发表的土卫二羽的细胞密度估计值最高可达10 4 个细胞/ mL,假设有足够的样本,这完全在离轴DHM的检测限内,置信区间大于或等于95%可以收集数量。 DHM提供的定量相成像可将矿物质与细胞区分开。离轴DHM能够快速进行低水平细菌检测和计数,这表明它具有作为检测现有微生物寿命的技术的可行性,只要可以完整捕获细胞并将其以足够体积的液体输送到样品室中进行成像即可。关键词:原位生命检测-大量微生物-全息显微镜-海洋世界-土卫二-成像。天体生物学17,913–925。

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