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PhaseStain: the digital staining of label-free quantitative phase microscopy images using deep learning

机译:PhaseStain:使用深度学习对无标签定量相显微镜图像进行数字染色

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摘要

Using a deep neural network, we demonstrate a digital staining technique, which we term PhaseStain, to transform the quantitative phase images (QPI) of label-free tissue sections into images that are equivalent to the brightfield microscopy images of the same samples that are histologically stained. Through pairs of image data (QPI and the corresponding brightfield images, acquired after staining), we train a generative adversarial network and demonstrate the effectiveness of this virtual-staining approach using sections of human skin, kidney, and liver tissue, matching the brightfield microscopy images of the same samples stained with Hematoxylin and Eosin, Jones’ stain, and Masson’s trichrome stain, respectively. This digital-staining framework may further strengthen various uses of label-free QPI techniques in pathology applications and biomedical research in general, by eliminating the need for histological staining, reducing sample preparation related costs and saving time. Our results provide a powerful example of some of the unique opportunities created by data-driven image transformations enabled by deep learning.
机译:使用深度神经网络,我们展示了一种数字染色技术(我们称之为PhaseStain),可以将无标签组织切片的定量相图像(QPI)转换为与组织学上相同的样品的明场显微图像等效的图像弄脏了。通过对图像数据(染色后获得的QPI和相应的明场图像),我们训练了一个生成的对抗网络,并使用人体皮肤,肾脏和肝脏组织的切片证明了这种虚拟染色方法的有效性,并与明场显微镜相匹配分别用苏木精和曙红,琼斯氏染料和马森三色染料染色的相同样品的图像。通过消除组织染色,减少与样品制备相关的成本并节省时间,该数字染色框架可进一步增强无标签QPI技术在病理学应用和生物医学研究中的各种用途。我们的结果提供了有力的例子,说明了深度学习支持的数据驱动图像转换所带来的一些独特机会。

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