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Mechanical unfolding of a beta-hairpin using molecular dynamics.

机译:使用分子动力学的β-发夹的机械展开。

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摘要

Single-molecule mechanical unfolding experiments have the potential to provide insights into the details of protein folding pathways. To investigate the relationship between force-extension unfolding curves and microscopic events, we performed molecular dynamics simulations of the mechanical unfolding of the C-terminal hairpin of protein G. We have studied the dependence of the unfolding pathway on pulling speed, cantilever stiffness, and attachment points. Under conditions that generate low forces, the unfolding trajectory mimics the untethered, thermally accessible pathway previously proposed based on high-temperature studies. In this stepwise pathway, complete breakdown of backbone hydrogen bonds precedes dissociation of the hydrophobic cluster. Under more extreme conditions, the cluster and hydrogen bonds break simultaneously. Transitions between folding intermediates can be identified in our simulations as features of the calculated force-extension curves.
机译:单分子机械展开实验具有提供深入了解蛋白质折叠途径细节的潜力。为了研究力-延伸展开曲线与微观事件之间的关系,我们对蛋白质G的C末端发夹的机械展开进行了分子动力学模拟。我们研究了展开路径对牵拉速度,悬臂刚度和弯曲强度的依赖性。附着点。在产生低力的条件下,展开轨迹模仿了先前基于高温研究提出的不受束缚的,热可及的路径。在该逐步途径中,主链氢键的完全分解先于疏水簇的解离。在更极端的条件下,团簇和氢键同时断裂。折叠中间体之间的过渡可以在我们的模拟中识别为所计算的力-延伸曲线的特征。

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