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A Study on a Nearly Neutral Mutation Model in Finite Populations

机译:有限群体中的近中性突变模型的研究

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摘要

As a nearly neutral mutation model, the house-of-cards model is studied in finite populations using computer simulations. The distribution of the mutant effect is assumed to be normal. The behavior is mainly determined by the product of the population size, N, and the standard deviation, σ, of the distribution of the mutant effect. If 4Nσ is large compared to one, a few advantageous mutants are quickly fixed in early generations. Then most mutation becomes deleterious and very slow increase of the average selection coefficient follows. It takes very long for the population to reach the equilibrium state. Substitutions of alleles occur very infrequently in the later stage. If 4Nσ is the order of one or less, the behavior is qualitatively similar to that of the strict neutral case. Gradual increase of the average selection coefficient occurs and in generations of several times the inverse of the mutation rate the population almost reaches the equilibrium state. Both advantageous and neutral (including slightly deleterious) mutations are fixed. Except in the early stage, an increase of the standard deviation of the distribution of the mutant effect decreases the average heterozygosity. The substitution rate is reduced as 4Nσ is increased. Three tests of neutrality, one using the relationship between the average and the variance of heterozygosity, another using the relationship between the average heterozygosity and the average number of substitutions and Watterson's homozygosity test are applied to the consequences of the present model. It is found that deviation from the neutral expectation becomes apparent only when 4Nσ is more than two. Also a simple approximation for the model is developed which works well when the mutation rate is very small.
机译:作为一种几乎中性的突变模型,使用计算机模拟在有限的种群中研究纸牌屋模型。假定突变效应的分布是正态的。该行为主要由种群大小N和突变效应分布的标准偏差σ的乘积确定。如果4Nσ比1N大,则一些有利的突变体会在早期世代迅速被固定。然后,大多数突变变得有害,并且随后平均选择系数的增加非常缓慢。总体要花很长时间才能达到平衡状态。等位基因的取代在以后很少发生。如果4Nσ为1或小于1的数量级,则该行为在质量上类似于严格中立情况的行为。平均选择系数逐渐增加,并且在几倍于突变率倒数的几代中,种群几乎达到平衡状态。有利和中性(包括轻微有害)的突变都是固定的。除了早期,突变效应分布的标准偏差的增加会降低平均杂合度。替代率随着4Nσ的增加而降低。三种中性检验,一种使用杂合性的平均值与方差之间的关系,另一种使用平均杂合性与平均取代数之间的关系,以及Watterson的纯合性检验,用于本模型的结果。发现只有当4Nσ大于2时​​,与中性期望的偏差才变得明显。还为模型开发了一个简单的近似值,当突变率非常小时,该近似值可以很好地工作。

著录项

  • 期刊名称 Genetics
  • 作者

    H. Tachida;

  • 作者单位
  • 年(卷),期 1991(128),1
  • 年度 1991
  • 页码 183–192
  • 总页数 10
  • 原文格式 PDF
  • 正文语种
  • 中图分类 遗传学;
  • 关键词

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