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Sequence heterogeneity of the major antigenic protein 1 genes from Cowdria ruminantium isolates from different geographical areas.

机译:来自不同地理区域的考德里亚反刍动物主要抗原蛋白1基因的序列异质性。

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摘要

The genes for the immunodominant major antigenic protein 1 (MAP1) of Cowdria ruminantium from four African and two Caribbean isolates were cloned, restriction mapped, and sequenced to identify conserved epitopes for development of serodiagnostic tools for heartwater. Restriction length polymorphisms were observed among the respective MAP1 genes analyzed and were confirmed by sequencing. The sequence data generated for these isolates were compared with data for the previously reported Senegal isolate MAP1 gene. These sequences were found to differ from each other by 0.6 to 14.0%. These differences translate into a 0.8 to 10.0% variation in the predicted protein sequence. In the entire coding sequence, several amino acid substitutions were identified in addition to deletions or insertions at three regions of the gene. These variable regions are referred to as variable regions I, II, and III. From the sequence data, an evolutionary distance tree was constructed; this tree suggested that at least two genetically distinct C. ruminantium strains exist in the Caribbean: the isolate from Antigua is similar to that from Senegal, while the isolate from Guadeloupe is closely related to that from Sudan.
机译:克隆了来自四个非洲和两个加勒比海分离株的反刍动物反刍动物的免疫优势主要抗原蛋白1(MAP1)的基因,进行了限制性酶切图谱和测序,以鉴定用于开发用于心脏水的血清诊断工具的保守表位。在分析的各个MAP1基因之间观察到限制性长度多态性,并通过测序证实。将这些分离物产生的序列数据与先前报道的塞内加尔分离物MAP1基因的数据进行比较。发现这些序列彼此相差0.6至14.0%。这些差异转化为预测的蛋白质序列中0.8%至10.0%的差异。在整个编码序列中,除了在基因的三个区域的缺失或插入之外,还鉴定了几个氨基酸取代。这些可变区被称为可变区I,II和III。根据序列数据,构建了进化距离树;这棵树表明在加勒比海至少存在两种​​在遗传上不同的反刍小球藻菌株:安提瓜的分离株与塞内加尔的分离株相似,而瓜德罗普的分离株与苏丹的分离株密切相关。

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