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The use of multiple group outlier detection methods to identify informative brain regions in magnetic resonance images

机译:使用多组离群值检测方法来识别磁共振图像中的信息性大脑区域

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摘要

The discovery of genetic markers that exhibit differential expression is of great interest in cancer studies. Researchers have now looked to find ways to identify genes with different expression patterns that exist only in a subset of the disease samples. Recently, a class of outlier detection methods has been developed to search for genes with outlier subsets. Using this approach, results in increased power to detect differences across groups relative to standard methods for group comparisons. Outlier detection has also been extended to handle multiple disease groups that are relevant to many more studies. The purpose of this research is to provide a comprehensive review of the class of two-group outlier detection methods which has been limited to date. From these results a modification is proposed to an existing method and the performance of this modification is examined via simulation studies. In addition, three extensions of two-group outlier detection methods are proposed to handle multiple group comparisons. Lastly, a novel application of these methods to structural magnetic resonance imaging data to identify informative brain regions related to cognitive decline in elderly adults is discussed.;Public Health Significance: Outlier detection is a significant contribution to public health as a method that allows researchers to investigate high-dimensional data where issues such as heterogeneity and multiple comparisons are problematic. These methods allow for the identification of factors, such as genes or brain regions, that are related to group membership while identifying homogeneous subpopulations in the data.;Keywords: Outlier Detection, Structural Magnetic Resonance Imaging, High Dimensional Data, Differential Gene Expression, False Discovery Rates.
机译:具有差异表达的遗传标记的发现在癌症研究中引起了极大的兴趣。现在,研究人员寻求寻找方法来鉴定仅存在于疾病样本子集中的具有不同表达方式的基因。最近,已经开发了一类离群值检测方法来搜索具有离群值子集的基因。与用于组比较的标​​准方法相比,使用这种方法可以提高检测组间差异的能力。离群值检测也已扩展到处理与更多研究相关的多个疾病组。本研究的目的是对迄今为止仅限于使用的两类离群值检测方法进行全面概述。根据这些结果,提出了对现有方法的修改,并通过仿真研究检查了该修改的性能。另外,提出了两组离群值检测方法的三个扩展来处理多组比较。最后,讨论了这些方法在结构磁共振成像数据中识别与老年人认知下降有关的信息性大脑区域的新应用。;公共卫生意义:离群值检测是一种对公共卫生的重要贡献,可让研究人员调查那些存在异质性和多重比较等问题的高维数据。这些方法可以识别与组成员相关的因素,例如基因或大脑区域,同时识别数据中的同质亚群。关键词:离群值检测,结构磁共振成像,高维数据,差异基因表达,假发现率。

著录项

  • 作者

    Pugh, Nathan A.;

  • 作者单位

    University of Pittsburgh.;

  • 授予单位 University of Pittsburgh.;
  • 学科 Biostatistics.;Genetics.;Oncology.
  • 学位 Ph.D.
  • 年度 2013
  • 页码 67 p.
  • 总页数 67
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

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