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Improving Online Clinical Trial Search Efficiency Using Natural Language Processing and Biomedical Ontology Mapping Approach

机译:使用自然语言处理和生物医学本体映射方法提高在线临床试验效率

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With the increasing demand for healthcare, computer technology and the internet are playing a more important role for patients, practitioners, and researchers. Oftentimes the process of seeking or providing care does not start in a waiting room or in a doctor's office, but online. Because of this, special attention must be concentrated in increasing the efficiency of online search engines so that the rest of the care process may also run smoothly. This research proposes a solution to improve the search efficiency for patients using natural language processing and SNOMED mapping techniques. In this research, clinical trials are extracted from ClinicalTrials.gov and n-gram method is applied to process the clinical trial contents. The processed terms are then mapped to SNOMED terms and a covariance matrix is formulated with the Jaccard similarity coefficient measuring similarity between a pair of clinical trials. Based on the similarity measures, the most relevant clinical trials are extracted for the searcher's needs. In the end, a comparative study is conducted to prove the enhancement of the search efficiency. In conclusion, the combination of n-gram model and SNOMED terminology mapping to process the clinical trial contents is proved to improve the efficiency for the online search of the clinical trials. Future research with clinical trials will use multiple methods such as ontological and statistical approaches to improve the precision and recall of the search results. Another interesting next step may be to explore clustering by analyzing the correlation structure of the clinical trial contents.
机译:随着对医疗保健的需求不断增加,计算机技术和互联网正在为患者,从业者和研究人员发挥更重要的作用。常时寻求或提供护理的过程不会在候诊室或医生办公室开始,但在线。因此,必须集中注意力,以提高在线搜索引擎的效率,以便其余的护理过程也可能顺利运行。本研究提出了一种解决方案来利用自然语言处理和Snomed映射技术来提高患者的搜索效率。在本研究中,从临床试验中提取,从临床上提取.GOV和N-GRAM方法用于处理临床试验含量。然后将处理的术语映射到Snomed术语,并且配制了协方差矩阵,其与一对临床试验之间的Jaccard相似度系数测量相似度。基于相似度措施,最相关的临床试验是为了搜索者的需求而提取。最后,进行了比较研究以证明寻找效率的增强。总之,证明了N-GRAM模型和Snomed术语测绘的组合,以提高临床试验在线搜查的效率。临床试验的未来研究将使用多种方法,如本体和统计方法,以改善搜索结果的精度和回忆。另一个有趣的下一步骤可以通过分析临床试验含量的相关结构来探索聚类。

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