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Splicing systems on graphs

机译:图上的拼接系统

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摘要

The notion of splicing systems has been introduced by Tom Head (1987) in order to model the recombinational behaviors of double-stranded DNA molecules under the simultaneous influence of specified classes of restriction enzymes. Yet for modelling complex: (bio)chemical processes of three-dimensional (macro)molecules in the three-dimensional space strings turn out to be more or less inadequate objects. Hence in this paper the author suggests graphs as more suitable objects for modelling such processes and introduces graph splicing systems. An illustrating example from the area of DNA splicing is elaborated in order to show the suitability of the new approach. The author exhibits the relation between regular graph splicing systems on graphs and splicing systems on strings and shows that his new model allows him to describe splicing systems on strings as well as on circular strings within a uniform framework.
机译:汤姆·海德(Tom Head,1987)引入了剪接系统的概念,目的是在特定种类的限制酶的同时影响下,模拟双链DNA分子的重组行为。然而,对于复杂的建模:三维空间字符串中的三维(宏观)分子的(生物)化学过程实际上或多或少是不足的对象。因此,在本文中,作者建议将图形作为更适合于对此类过程进行建模的对象,并介绍图形拼接系统。为了说明这种新方法的适用性,从DNA剪接领域举例说明了一个例子。作者展示了图形上的规则图形拼接系统与字符串上的拼接系统之间的关系,并表明他的新模型允许他在统一框架内描述字符串以及圆形字符串上的拼接系统。

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