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Grading of mammalian cumulus oocyte complexes using machine learning for in vitro embryo culture

机译:使用机器学习对哺乳动物卵丘卵母细胞复合体进行分级以用于体外胚胎培养

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Visual observation of Cumulus Oocyte Complexes provides only limited information about its functional competence, whereas the molecular evaluations methods are cumbersome or costly. Image analysis of mammalian oocytes can provide attractive alternative to address this challenge. However, it is complex, given the huge number of oocytes under inspection and the subjective nature of the features inspected for identification. Supervised machine learning methods like random forest with annotations from expert biologists can make the analysis task standardized and reduces inter-subject variability. We present a semiautomatic framework for predicting the class an oocyte belongs to, based on multi-object parametric segmentation on the acquired microscopic image followed by a feature based classification using random forests.
机译:目视观察卵丘卵母细胞复合物只能提供有关其功能能力的有限信息,而分子评估方法既麻烦又昂贵。哺乳动物卵母细胞的图像分析可以提供有吸引力的替代方案来应对这一挑战。但是,由于要检查的卵母细胞数量众多,并且要检查的特征是否具有主观性,因此它很复杂。有监督的机器学习方法,例如带有专家生物学家注释的随机森林,可以使分析任务标准化,并减少对象间的变异性。我们提出了一个半自动的框架,用于预测卵母细胞所属的类,它基于对获取的显微图像进行多对象参数分割,然后使用随机森林进行基于特征的分类。

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