SEQPACKER: A Biologist-Friendly User Interface to Manipulate Nucleotide Sequences in Genomic Epidemiology

机译：SEQPACKER：生物学家友好的用户界面，可在基因组流行病学中操作核苷酸序列

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摘要

The aim of this paper is to present a new integrated bioinformatics tool for manipulating nucleotide sequences with a user-friendly graphical interface. This tool is named "SeqPacker" because it uses DNA/RNA sequences. In addition, SeqPacker can be seen as a kind of nucleotide chain editor using standardized technologies, nucleotide representation standards, and high platform portability in support of research in Genomic Epidemiology. SeqPacker is written in JAVA as free and stand-alone software for several computer platforms.

机译：本文的目的是提出一种新的集成生物信息学工具，用于通过用户友好的图形界面操作核苷酸序列。该工具被称为“ SeqPacker”，因为它使用DNA / RNA序列。此外，可以将SeqPacker视为一种使用标准化技术，核苷酸表示标准和高平台可移植性来支持基因组流行病学研究的核苷酸链编辑器。 SeqPacker是用JAVA编写的，它是针对多个计算机平台的免费和独立软件。

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来源
《International Symposium on Biological and Medical Data Analysis(ISBMDA 2004); 20041118-19; Barcelona(ES)》|2004年|P.368-377|共10页
会议地点 Barcelona(ES)
作者
Oscar Coltell; Miguel Arregui; Larry Parnell; Dolores Corella; Ricardo Chalmeta; Jose M. Ordovas;
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作者单位

Systems Integration and Re-Engineering Research Group (IRIS), Universitat Jaume I, Avda. Vicent Sos Baynat, s, 12071-Castell6n, Spain;

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会议组织
原文格式 PDF
正文语种 eng
中图分类生物医学工程;计算技术、计算机技术;
关键词
bioinformatics tool; visual editor for DNA sequences; nucleotide representation standards; JAVA stand-alone interface; genomic epidemiology research support;

机译：生物信息学工具； DNA序列的可视化编辑器；核苷酸表示标准； JAVA独立接口；基因组流行病学研究支持;

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4. SEQPACKER: A Biologist-Friendly User Interface to Manipulate Nucleotide Sequences in Genomic Epidemiology [C] . Oscar Coltell, Miguel Arregui, Larry Parnell, International Symposium on Biological and Medical Data Analysis(ISBMDA 2004) . 2004

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7. Ca2+-binding proteins in the retina: from discovery to etiology of human disease11The nucleotide sequences reported in this manuscript have been submitted to the GenBank™/EMBL databank with the following accession numbers: short form of human CaBP1, AF169148; long form of human CaBP1, AF169149; short form of bovine CaBP1, AF169150; long form of bovine CaBP1, AF169151; short form of mouse CaBP1, AF169153; long form of mouse CaBP1, AF1691152; human CaBP2, AF169154; bovine CaBP2, AF169155; short form of mouse CaBP2, AF169156; long form of mouse CaBP2, AF169157; human CaBP3, AF169158; human CaBP5, AF169159; bovine CaBP5, AF169160; mouse CaBP5, AF169161; human CaBP2 genomic sequence, AF170811; exons 1, 2-3-4, 5, 6 of human CaBP5 genomic sequence, AF170812, AF170813, AF170814, AF170815, respectively, and exons 1-2, 3-4, 5, 6 of human CaBP3 genomic sequence, AF170816, AF170817, AF170818, AF170815, respectively, and published recently F. Haeseleer et al. (2000) J. Biol. Chem. 275, 1247–1260. [O] . Sokal Izabela, Li Ning, Verlinde Christophe L.M.J., 2000

机译：视网膜中的Ca2 +结合蛋白：从人类疾病的发现到病因学11该手稿中报道的核苷酸序列已提交至GenBank™/ EMBL数据库，其登录号如下：人CaBP1的缩写形式，AF169148；人类CaBP1的长形式，AF169149；牛CaBP1的缩写，AF169150；牛CaBP1的长形式，AF169151；小鼠CaBP1，AF169153的缩写；长型小鼠CaBP1，AF1691152；人CaBP2，AF169154；牛CaBP2，AF169155;小鼠CaBP2的缩写，AF169156；长型小鼠CaBP2，AF169157；人CaBP3，AF169158；人CaBP5，AF169159；牛CaBP5，AF169160;小鼠CaBP5，AF169161；人CaBP2基因组序列，AF170811；人CaBP5基因组序列的外显子1、2-3-4、5、6，AF170812，AF170813，AF170814，AF170815和人CaBP3基因组序列的外显子1-2、3-4、5、6，AF170816，AF170817 ，AF170818，AF170815并在最近发表F. Haeseleer等。（2000）J.Biol。化学275，1247–1260。

SEQPACKER: A Biologist-Friendly User Interface to Manipulate Nucleotide Sequences in Genomic Epidemiology

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